MDP0000775116, MDP0000775116 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000775116
Unique Name	MDP0000775116
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1449

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr10	chromosome	chr10:16172926..16174374 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC010558.406	contig	MDC010558.406:13970..15418 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000775116_exon_1	MDP0000775116_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000775116	MDP0000775116	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PFAM	PF00646	F-box	coord: 10..48 score: 0.
IPR001810	F-box domain, cyclin-like	SUPERFAMILY	81383	F-box domain	coord: 12..161 score: 3.7
IPR006527	F-box associated domain, type 1	PFAM	PF07734	FBA_1	coord: 268..429 score: 0.0
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	F_box_assoc_1: F-box protein interaction domain	coord: 197..428 score: 2.6
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 7..45 score: 2.6
None	No IPR available	SEG	seg	seg	coord: 94..98 score: NAcoord: 444..454 score
None	No IPR available	SEG	seg	seg	coord: 19..31 score
None	No IPR available	SEG	seg	seg	coord: 12..24 score
None	No IPR available	SEG	seg	seg	coord: 44..69 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:16172926..16174374+
mRNA from alignment at MDC010558.406:13970..15418+
coding sequence from alignment at MDC010558.406:13970..15418+

mRNA sequence

>MDP0000775116 ID=MDP0000775116; Name=MDP0000775116; organism=Malus x domestica; type=mRNA; length=1449bp
ATGACGAACAAAACATCCAAAATTGGACAAGATTTGTTGGTGAATATTCT
GTCAACTTTGCCTCCGAAATCTCTGATACGATTCAAGTGCGTCGCTAAAT
GGTGGCATGCTCTCATCAACGACCCCAGGTTCGTCGACAAACACCTCTCC
CATTCCTTGCTGGACGATCAATCCACTCGTGTCCTTTTAAAAAGAATGTT
AGTCCCTCCTACAGAAGACCCAAATGGTGACAAAATTCAATCCGTATTCT
CAGTACTTACTTTTGACAATGTCATTGTTGATGATGACGATGATGGTGTG
CATAAGTGTAGCACTCTTTCTGGGATCGAGGACATCAATATTCCTCTTTC
TATGAGTCTAGAGATTGGAGATGATCGATCATTTCATGTTATAGGTCATT
GTGATGGGATCATTTGTCTAGCTCGGCCTAATTCTACTAAGGTGCTTTTG
TGGAATCCGGCAATTCAGGAATTCAGGGTCCTTCCCTTGGAGACATACAT
TCCAGATTGGTTTGACGAAGCATCCCGTARGGATCCTCATCCTTGGTGGT
TGGGTATGCCTTACATGCCACTAACAAGTCGGTTCAACGATGTTTTGGGA
TTAGGCTATGATCCTAAATCTAAAGATTACAAAGTTGTCAAAATTGGATT
TTCTGGTTCAGAATTGCATGGCGACACAAAACATTTGCTTATTCATCCTC
CCAAGGTAGTAGTGTATACCTTGGGAACAGATTCGTGGAGAGAGATCAAG
CCTTGTTCTTTAGAAACGGAAACTACTTTCCTTTGGCCTGAAACTTTTCA
GGTGTACTTCAAGGGGATGTGTTATTGGATAGGAAGTGAGCAACAAAAGG
AATTTGTCCATAGCTATGATGCCACCTATCAGGAGGAAGAAAAGATTAGG
CGAGTGATCGTGTTGTTTGACATGAGTTGTGAGGTGTTTCATGACATACT
GTTACCACATGAGATGCTAGAGTTCAACGATTTCAGAGGAGTTGGCCTTG
ACATTCGTCTTAAGGTGTGGAATGAATCCATCGCTCTTTTTCGCTTGAAT
ATATATACTTTTGAGGATGGTGATGCACTAACCTTTGAAATGTGGCTAAT
GGATGATGATTTTGGTGGTGGTGGGACTAATGAAGGTAGTGTTTGGACAA
AACACTTTGCATCCAAGATCCCAACGTTCTCAATGTCCCCTGTCCACCTG
CGCAACACATTGGCAATGTGGAAGAGCGACGAGGTTCTTCTGTTAACGGA
TAATGGATGCATAGTCTGCTATAACATCCGTACTAAAAACCTTAAAAATC
TTCCCATTCAAACTGCTGTAAGGATTATTCCCTGTTTTCCTCCACCACCG
TCTTATTTTCCACTGTGCAAAGCAAATCATTCGCCTCTTGTATATGTGAA
GAGTATAGTTTCGGTCATGGAAGGCAACAAGAAGTACAAGAGTACGTAG

protein sequence of MDP0000775116

>MDP0000775116 ID=MDP0000775116; Name=MDP0000775116; organism=Malus x domestica; type=polypeptide; length=483bp
MTNKTSKIGQDLLVNILSTLPPKSLIRFKCVAKWWHALINDPRFVDKHLS
HSLLDDQSTRVLLKRMLVPPTEDPNGDKIQSVFSVLTFDNVIVDDDDDGV
HKCSTLSGIEDINIPLSMSLEIGDDRSFHVIGHCDGIICLARPNSTKVLL
WNPAIQEFRVLPLETYIPDWFDEASRXDPHPWWLGMPYMPLTSRFNDVLG
LGYDPKSKDYKVVKIGFSGSELHGDTKHLLIHPPKVVVYTLGTDSWREIK
PCSLETETTFLWPETFQVYFKGMCYWIGSEQQKEFVHSYDATYQEEEKIR
RVIVLFDMSCEVFHDILLPHEMLEFNDFRGVGLDIRLKVWNESIALFRLN
IYTFEDGDALTFEMWLMDDDFGGGGTNEGSVWTKHFASKIPTFSMSPVHL
RNTLAMWKSDEVLLLTDNGCIVCYNIRTKNLKNLPIQTAVRIIPCFPPPP
SYFPLCKANHSPLVYVKSIVSVMEGNKKYKST*

mRNA from alignment at chr10:16172926..16174374+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000775116 ID=MDP0000775116; Name=MDP0000775116; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr10:16172926..16174374+ (Malus x domestica

mRNA from alignment at MDC010558.406:13970..15418+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000775116 ID=MDP0000775116; Name=MDP0000775116; organism=Malus x domestica; type=mRNA; length=1449bp; location=Sequence derived from: MDC010558.406:13970..15418+ (Malus x domestica
ATGACGAACAAAACATCCAAAATTGGACAAGATTTGTTGGTGAATATTCT
GTCAACTTTGCCTCCGAAATCTCTGATACGATTCAAGTGCGTCGCTAAAT
GGTGGCATGCTCTCATCAACGACCCCAGGTTCGTCGACAAACACCTCTCC
CATTCCTTGCTGGACGATCAATCCACTCGTGTCCTTTTAAAAAGAATGTT
AGTCCCTCCTACAGAAGACCCAAATGGTGACAAAATTCAATCCGTATTCT
CAGTACTTACTTTTGACAATGTCATTGTTGATGATGACGATGATGGTGTG
CATAAGTGTAGCACTCTTTCTGGGATCGAGGACATCAATATTCCTCTTTC
TATGAGTCTAGAGATTGGAGATGATCGATCATTTCATGTTATAGGTCATT
GTGATGGGATCATTTGTCTAGCTCGGCCTAATTCTACTAAGGTGCTTTTG
TGGAATCCGGCAATTCAGGAATTCAGGGTCCTTCCCTTGGAGACATACAT
TCCAGATTGGTTTGACGAAGCATCCCGTARGGATCCTCATCCTTGGTGGT
TGGGTATGCCTTACATGCCACTAACAAGTCGGTTCAACGATGTTTTGGGA
TTAGGCTATGATCCTAAATCTAAAGATTACAAAGTTGTCAAAATTGGATT
TTCTGGTTCAGAATTGCATGGCGACACAAAACATTTGCTTATTCATCCTC
CCAAGGTAGTAGTGTATACCTTGGGAACAGATTCGTGGAGAGAGATCAAG
CCTTGTTCTTTAGAAACGGAAACTACTTTCCTTTGGCCTGAAACTTTTCA
GGTGTACTTCAAGGGGATGTGTTATTGGATAGGAAGTGAGCAACAAAAGG
AATTTGTCCATAGCTATGATGCCACCTATCAGGAGGAAGAAAAGATTAGG
CGAGTGATCGTGTTGTTTGACATGAGTTGTGAGGTGTTTCATGACATACT
GTTACCACATGAGATGCTAGAGTTCAACGATTTCAGAGGAGTTGGCCTTG
ACATTCGTCTTAAGGTGTGGAATGAATCCATCGCTCTTTTTCGCTTGAAT
ATATATACTTTTGAGGATGGTGATGCACTAACCTTTGAAATGTGGCTAAT
GGATGATGATTTTGGTGGTGGTGGGACTAATGAAGGTAGTGTTTGGACAA
AACACTTTGCATCCAAGATCCCAACGTTCTCAATGTCCCCTGTCCACCTG
CGCAACACATTGGCAATGTGGAAGAGCGACGAGGTTCTTCTGTTAACGGA
TAATGGATGCATAGTCTGCTATAACATCCGTACTAAAAACCTTAAAAATC
TTCCCATTCAAACTGCTGTAAGGATTATTCCCTGTTTTCCTCCACCACCG
TCTTATTTTCCACTGTGCAAAGCAAATCATTCGCCTCTTGTATATGTGAA
GAGTATAGTTTCGGTCATGGAAGGCAACAAGAAGTACAAGAGTACGTAG

Coding sequence (CDS) from alignment at MDC010558.406:13970..15418+

>MDP0000775116 ID=MDP0000775116; Name=MDP0000775116; organism=Malus x domestica; type=CDS; length=1449bp; location=Sequence derived from: MDC010558.406:13970..15418+ (Malus x domestica
ATGACGAACAAAACATCCAAAATTGGACAAGATTTGTTGGTGAATATTCT
GTCAACTTTGCCTCCGAAATCTCTGATACGATTCAAGTGCGTCGCTAAAT
GGTGGCATGCTCTCATCAACGACCCCAGGTTCGTCGACAAACACCTCTCC
CATTCCTTGCTGGACGATCAATCCACTCGTGTCCTTTTAAAAAGAATGTT
AGTCCCTCCTACAGAAGACCCAAATGGTGACAAAATTCAATCCGTATTCT
CAGTACTTACTTTTGACAATGTCATTGTTGATGATGACGATGATGGTGTG
CATAAGTGTAGCACTCTTTCTGGGATCGAGGACATCAATATTCCTCTTTC
TATGAGTCTAGAGATTGGAGATGATCGATCATTTCATGTTATAGGTCATT
GTGATGGGATCATTTGTCTAGCTCGGCCTAATTCTACTAAGGTGCTTTTG
TGGAATCCGGCAATTCAGGAATTCAGGGTCCTTCCCTTGGAGACATACAT
TCCAGATTGGTTTGACGAAGCATCCCGTARGGATCCTCATCCTTGGTGGT
TGGGTATGCCTTACATGCCACTAACAAGTCGGTTCAACGATGTTTTGGGA
TTAGGCTATGATCCTAAATCTAAAGATTACAAAGTTGTCAAAATTGGATT
TTCTGGTTCAGAATTGCATGGCGACACAAAACATTTGCTTATTCATCCTC
CCAAGGTAGTAGTGTATACCTTGGGAACAGATTCGTGGAGAGAGATCAAG
CCTTGTTCTTTAGAAACGGAAACTACTTTCCTTTGGCCTGAAACTTTTCA
GGTGTACTTCAAGGGGATGTGTTATTGGATAGGAAGTGAGCAACAAAAGG
AATTTGTCCATAGCTATGATGCCACCTATCAGGAGGAAGAAAAGATTAGG
CGAGTGATCGTGTTGTTTGACATGAGTTGTGAGGTGTTTCATGACATACT
GTTACCACATGAGATGCTAGAGTTCAACGATTTCAGAGGAGTTGGCCTTG
ACATTCGTCTTAAGGTGTGGAATGAATCCATCGCTCTTTTTCGCTTGAAT
ATATATACTTTTGAGGATGGTGATGCACTAACCTTTGAAATGTGGCTAAT
GGATGATGATTTTGGTGGTGGTGGGACTAATGAAGGTAGTGTTTGGACAA
AACACTTTGCATCCAAGATCCCAACGTTCTCAATGTCCCCTGTCCACCTG
CGCAACACATTGGCAATGTGGAAGAGCGACGAGGTTCTTCTGTTAACGGA
TAATGGATGCATAGTCTGCTATAACATCCGTACTAAAAACCTTAAAAATC
TTCCCATTCAAACTGCTGTAAGGATTATTCCCTGTTTTCCTCCACCACCG
TCTTATTTTCCACTGTGCAAAGCAAATCATTCGCCTCTTGTATATGTGAA
GAGTATAGTTTCGGTCATGGAAGGCAACAAGAAGTACAAGAGTACGTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006527	F-box-assoc_dom_typ1
IPR017451	F-box-assoc_interact_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding