MDP0000803911, MDP0000803911 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000803911
Unique NameMDP0000803911
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length537
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000803911_exon_1MDP0000803911_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000803911MDP0000803911Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184Ring fingercoord: 118..159
score: 8.6
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 118..160
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 115..163
score: 1.3
NoneNo IPR availablePANTHERPTHR22764FAMILY NOT NAMEDcoord: 40..160
score: 8.8
NoneNo IPR availablePANTHERPTHR22764:SF16 ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEINcoord: 40..160
score: 8.8
NoneNo IPR availablePFAMPF13639zf-RING_2coord: 118..161
score: 8.5
NoneNo IPR availableSEGsegsegcoord: 5..21
score: NAcoord: 44..57
score: NAcoord: 106..117
score
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 117..166
score: 1.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000803911 ID=MDP0000803911; Name=MDP0000803911; organism=Malus x domestica; type=mRNA; length=537bp
ATGGCTCAAACATCCCCTCCTCCAATTCCTTCAGTGCCTCCAATTCCCAG
TCCCATCTCAATAAGAACACTTTGTGATCAAAACCCTAATCATGATCAAT
TCCAACCCATTCATCATCTCAATTTTATGGTCATCTTGGCAGCAATTTTG
TGTGCCCTTGTGTGTGTTCTTGGTATCAATTCCATGTTGCACTGCGTTTT
TCAATGCGCAAGTCGTGCCGTCATTGAACCGGTCGAATGGGTAGCTTCAC
GCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACT
TCAACTTACGCTGATTCAGGTACTACTTCTCCATCTTCGTCGTCTTCAGG
CTGCGCTATTTGTTTGGCTGATTTTTCTGATGGGGACAAGTTAAGGGTGC
TGCCCAAGTGCAACCATCGGTTTCATGTTGCCTGCATTGACAAGTGGTTG
CTCTGCCACTCTTCTTGTCCGACTTGCCGACATCGGCTCAAGTCCAGTGA
CTGCATGCCCTCTCTTTCTGAGATTGTCACAGCCTAA
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protein sequence of MDP0000803911

>MDP0000803911 ID=MDP0000803911; Name=MDP0000803911; organism=Malus x domestica; type=polypeptide; length=179bp
MAQTSPPPIPSVPPIPSPISIRTLCDQNPNHDQFQPIHHLNFMVILAAIL
CALVCVLGINSMLHCVFQCASRAVIEPVEWVASRRLNSGLKKKEMVALPT
STYADSGTTSPSSSSSGCAICLADFSDGDKLRVLPKCNHRFHVACIDKWL
LCHSSCPTCRHRLKSSDCMPSLSEIVTA*
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mRNA from alignment at chr10:23930679..23931215-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000803911 ID=MDP0000803911; Name=MDP0000803911; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr10:23930679..23931215- (Malus x domestica
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mRNA from alignment at MDC004936.114:24174..24710-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000803911 ID=MDP0000803911; Name=MDP0000803911; organism=Malus x domestica; type=mRNA; length=537bp; location=Sequence derived from: MDC004936.114:24174..24710- (Malus x domestica
ATGGCTCAAACATCCCCTCCTCCAATTCCTTCAGTGCCTCCAATTCCCAG
TCCCATCTCAATAAGAACACTTTGTGATCAAAACCCTAATCATGATCAAT
TCCAACCCATTCATCATCTCAATTTTATGGTCATCTTGGCAGCAATTTTG
TGTGCCCTTGTGTGTGTTCTTGGTATCAATTCCATGTTGCACTGCGTTTT
TCAATGCGCAAGTCGTGCCGTCATTGAACCGGTCGAATGGGTAGCTTCAC
GCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACT
TCAACTTACGCTGATTCAGGTACTACTTCTCCATCTTCGTCGTCTTCAGG
CTGCGCTATTTGTTTGGCTGATTTTTCTGATGGGGACAAGTTAAGGGTGC
TGCCCAAGTGCAACCATCGGTTTCATGTTGCCTGCATTGACAAGTGGTTG
CTCTGCCACTCTTCTTGTCCGACTTGCCGACATCGGCTCAAGTCCAGTGA
CTGCATGCCCTCTCTTTCTGAGATTGTCACAGCCTAA
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Coding sequence (CDS) from alignment at MDC004936.114:24174..24710-

>MDP0000803911 ID=MDP0000803911; Name=MDP0000803911; organism=Malus x domestica; type=CDS; length=537bp; location=Sequence derived from: MDC004936.114:24174..24710- (Malus x domestica
ATGGCTCAAACATCCCCTCCTCCAATTCCTTCAGTGCCTCCAATTCCCAG
TCCCATCTCAATAAGAACACTTTGTGATCAAAACCCTAATCATGATCAAT
TCCAACCCATTCATCATCTCAATTTTATGGTCATCTTGGCAGCAATTTTG
TGTGCCCTTGTGTGTGTTCTTGGTATCAATTCCATGTTGCACTGCGTTTT
TCAATGCGCAAGTCGTGCCGTCATTGAACCGGTCGAATGGGTAGCTTCAC
GCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACT
TCAACTTACGCTGATTCAGGTACTACTTCTCCATCTTCGTCGTCTTCAGG
CTGCGCTATTTGTTTGGCTGATTTTTCTGATGGGGACAAGTTAAGGGTGC
TGCCCAAGTGCAACCATCGGTTTCATGTTGCCTGCATTGACAAGTGGTTG
CTCTGCCACTCTTCTTGTCCGACTTGCCGACATCGGCTCAAGTCCAGTGA
CTGCATGCCCTCTCTTTCTGAGATTGTCACAGCCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding