MDP0000835932, MDP0000835932 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000835932
Unique NameMDP0000835932
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1053
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000835932_exon_1MDP0000835932_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000835932MDP0000835932Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPFAMPF00069Pkinasecoord: 6..262
score: 1.6
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 3..262
score: 40
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 3..262
score: 2.4
IPR008271Serine/threonine-protein kinase, active sitePROSITEPS00108PROTEIN_KINASE_STcoord: 126..138
score
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 2..313
score: 2.7
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 3..260
score: 1.1
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 94..280
score: 2.9
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 5..93
score: 2.8
NoneNo IPR availablePANTHERPTHR24361FAMILY NOT NAMEDcoord: 2..299
score: 3e
NoneNo IPR availablePANTHERPTHR24361:SF58SUBFAMILY NOT NAMEDcoord: 2..299
score: 3e
NoneNo IPR availableSEGsegsegcoord: 10..32
score
NoneNo IPR availableSEGsegsegcoord: 27..37
score: NAcoord: 80..92
score
NoneNo IPR availableSEGsegsegcoord: 14..25
score: NAcoord: 37..43
score
NoneNo IPR availableSEGsegsegcoord: 28..42
score: NAcoord: 66..78
score
NoneNo IPR availableSEGsegsegcoord: 16..28
score
NoneNo IPR availableSEGsegsegcoord: 214..224
score
NoneNo IPR availableSEGsegsegcoord: 13..25
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000835932 ID=MDP0000835932; Name=MDP0000835932; organism=Malus x domestica; type=mRNA; length=1053bp
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGGGGAAGCTTCGCCACCAT
CTACACAGCAAAATCCACCAGCCCATCTTCTCATCTTCCGCCGCTGGTGG
CCSTGAAGGCGTCTGAATCCGGCTACTCTGATTCGCTCAAGAACGAGAAG
CAAGTCCTCGACCAAATCGGCTCCTGCCCACAAATCATCCGCTGCTTCGG
CGCCGATCACTCCGTYGAGAACGGCGAGAAATTCTACAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGATGAGCTCAAAAGAAACGGCGGA
CGCTTGCCGGAATTTGATGTTCAACGCCACACAAAGTCGGTGCTCAGAGG
CCTTGAATTCATCCACRCAAAAGGGTTCGTCCACTGCGACTTGAAGCTTC
AGAATGTCCTGGTTTTCGCCGACGGCGCGGCGAAAATTGCCGACTTCGGG
CTGGCGAAGARAGCAGGGGAATCGGATAACAAGGTCGAAGTCAGGGGAAC
GCCACTGTACATGGCGCCGGAATCTGTTAACGACAATGAATACGAGTCCT
GCTCCGACGTCTGGGCTCTCGGGTGTTTGGTGGCGGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGGCGTGAACATGTTCAAGCTTCTGAT
GASGATTKKAGGCGACGAGTTGCCGCAAATCCCAGAGGAGTTGAGTGAAG
ACGGCAAAGATTTTGTTTCCAAGTGTTTTGTGAAGGATCCCAGACAGAGA
TGGACGGCTGAGATGCTTCTTGAGCACGCGTTTGTTTCCGGCGACGATCA
CACTGTTCTATCGGAGGAGAAGGCGCAGCTGTCGGCGTCTCCGAGAGGSC
CATTCGATTTTCCGGATTGGGTTTCGGTGGCKAGTTCAGAAATTTCTCCA
CAATTTGTGGAATGGTCTGGGAAAAATTTGGACTCCGAGTTCGATTGGTC
GTSGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGTTGGCGA
CGGAGGAGAAACCCAATTGGTCGTTCTCTGAAGATTGGGTAACAATTATG
TGA
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protein sequence of MDP0000835932

>MDP0000835932 ID=MDP0000835932; Name=MDP0000835932; organism=Malus x domestica; type=polypeptide; length=351bp
MEWIRGKEIGRGSFATIYTAKSTSPSSHLPPLVAXKASESGYSDSLKNEK
QVLDQIGSCPQIIRCFGADHSVENGEKFYNLVLEYASGGTLADELKRNGG
RLPEFDVQRHTKSVLRGLEFIHXKGFVHCDLKLQNVLVFADGAAKIADFG
LAKXAGESDNKVEVRGTPLYMAPESVNDNEYESCSDVWALGCLVAEMASG
KPVWDHNPGVNMFKLLMXIXGDELPQIPEELSEDGKDFVSKCFVKDPRQR
WTAEMLLEHAFVSGDDHTVLSEEKAQLSASPRGPFDFPDWVSVASSEISP
QFVEWSGKNLDSEFDWSXRKSFVPAADRLRQLATEEKPNWSFSEDWVTIM
*
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mRNA from alignment at chr15:23910626..23911678-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000835932 ID=MDP0000835932; Name=MDP0000835932; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:23910626..23911678- (Malus x domestica
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mRNA from alignment at MDC021502.277:1881..2933-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000835932 ID=MDP0000835932; Name=MDP0000835932; organism=Malus x domestica; type=mRNA; length=1053bp; location=Sequence derived from: MDC021502.277:1881..2933- (Malus x domestica
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGGGGAAGCTTCGCCACCAT
CTACACAGCAAAATCCACCAGCCCATCTTCTCATCTTCCGCCGCTGGTGG
CCSTGAAGGCGTCTGAATCCGGCTACTCTGATTCGCTCAAGAACGAGAAG
CAAGTCCTCGACCAAATCGGCTCCTGCCCACAAATCATCCGCTGCTTCGG
CGCCGATCACTCCGTYGAGAACGGCGAGAAATTCTACAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGATGAGCTCAAAAGAAACGGCGGA
CGCTTGCCGGAATTTGATGTTCAACGCCACACAAAGTCGGTGCTCAGAGG
CCTTGAATTCATCCACRCAAAAGGGTTCGTCCACTGCGACTTGAAGCTTC
AGAATGTCCTGGTTTTCGCCGACGGCGCGGCGAAAATTGCCGACTTCGGG
CTGGCGAAGARAGCAGGGGAATCGGATAACAAGGTCGAAGTCAGGGGAAC
GCCACTGTACATGGCGCCGGAATCTGTTAACGACAATGAATACGAGTCCT
GCTCCGACGTCTGGGCTCTCGGGTGTTTGGTGGCGGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGGCGTGAACATGTTCAAGCTTCTGAT
GASGATTKKAGGCGACGAGTTGCCGCAAATCCCAGAGGAGTTGAGTGAAG
ACGGCAAAGATTTTGTTTCCAAGTGTTTTGTGAAGGATCCCAGACAGAGA
TGGACGGCTGAGATGCTTCTTGAGCACGCGTTTGTTTCCGGCGACGATCA
CACTGTTCTATCGGAGGAGAAGGCGCAGCTGTCGGCGTCTCCGAGAGGSC
CATTCGATTTTCCGGATTGGGTTTCGGTGGCKAGTTCAGAAATTTCTCCA
CAATTTGTGGAATGGTCTGGGAAAAATTTGGACTCCGAGTTCGATTGGTC
GTSGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGTTGGCGA
CGGAGGAGAAACCCAATTGGTCGTTCTCTGAAGATTGGGTAACAATTATG
TGA
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Coding sequence (CDS) from alignment at MDC021502.277:1881..2933-

>MDP0000835932 ID=MDP0000835932; Name=MDP0000835932; organism=Malus x domestica; type=CDS; length=1053bp; location=Sequence derived from: MDC021502.277:1881..2933- (Malus x domestica
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGGGGAAGCTTCGCCACCAT
CTACACAGCAAAATCCACCAGCCCATCTTCTCATCTTCCGCCGCTGGTGG
CCSTGAAGGCGTCTGAATCCGGCTACTCTGATTCGCTCAAGAACGAGAAG
CAAGTCCTCGACCAAATCGGCTCCTGCCCACAAATCATCCGCTGCTTCGG
CGCCGATCACTCCGTYGAGAACGGCGAGAAATTCTACAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGATGAGCTCAAAAGAAACGGCGGA
CGCTTGCCGGAATTTGATGTTCAACGCCACACAAAGTCGGTGCTCAGAGG
CCTTGAATTCATCCACRCAAAAGGGTTCGTCCACTGCGACTTGAAGCTTC
AGAATGTCCTGGTTTTCGCCGACGGCGCGGCGAAAATTGCCGACTTCGGG
CTGGCGAAGARAGCAGGGGAATCGGATAACAAGGTCGAAGTCAGGGGAAC
GCCACTGTACATGGCGCCGGAATCTGTTAACGACAATGAATACGAGTCCT
GCTCCGACGTCTGGGCTCTCGGGTGTTTGGTGGCGGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGGCGTGAACATGTTCAAGCTTCTGAT
GASGATTKKAGGCGACGAGTTGCCGCAAATCCCAGAGGAGTTGAGTGAAG
ACGGCAAAGATTTTGTTTCCAAGTGTTTTGTGAAGGATCCCAGACAGAGA
TGGACGGCTGAGATGCTTCTTGAGCACGCGTTTGTTTCCGGCGACGATCA
CACTGTTCTATCGGAGGAGAAGGCGCAGCTGTCGGCGTCTCCGAGAGGSC
CATTCGATTTTCCGGATTGGGTTTCGGTGGCKAGTTCAGAAATTTCTCCA
CAATTTGTGGAATGGTCTGGGAAAAATTTGGACTCCGAGTTCGATTGGTC
GTSGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGTTGGCGA
CGGAGGAGAAACCCAATTGGTCGTTCTCTGAAGATTGGGTAACAATTATG
TGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom_sf
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004674protein serine/threonine kinase activity
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation