MDP0000850802, MDP0000850802 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000850802
Unique NameMDP0000850802
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1743
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.02012-04-02
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000850802_exon_1MDP0000850802_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000850802MDP0000850802Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 258..556
score: 5.9e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 43..200
score: 1.3
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 42..196
score: 2.3
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 42..196
score: 3.6
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 37..197
score: 2.4
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 44..203
score: 7.9
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 251..575
score: 9.6
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 255..573
score: 8.6e
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 111..507
score: 2.7
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 111..507
score: 2.7
NoneNo IPR availableSEGsegsegcoord: 7..29
score
NoneNo IPR availableSEGsegsegcoord: 11..26
score
NoneNo IPR availableSEGsegsegcoord: 118..138
score
NoneNo IPR availableSEGsegsegcoord: 116..127
score: NAcoord: 138..155
score: NAcoord: 252..257
score
NoneNo IPR availableSEGsegsegcoord: 14..24
score
NoneNo IPR availableSEGsegsegcoord: 76..90
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000850802 ID=MDP0000850802; Name=MDP0000850802; organism=Malus x domestica; type=mRNA; length=1743bp
ATGGCACTTAATAAAAAAGTGGTAGTATCGGGGATTTCCCTGATACTTGT
GGTTGGTGCGGTCATCGGAGCGGTGGTGGCCGTAGTCCACTACCAAAAGA
AGCCGGGAAGCGAGTCTCTAACAGCGCAGCAGAAGATGGTGACCCAAATC
TGTAATTTCACCGACTACCAACAGGAATGCCAGAAGAGCCTCGGCCCCGT
CTCACAAAATAACAACGCCGAGTTTAAGGACTACGTAAAGGCCGCATTGA
TGTCCATCTCTGAGGAGGCCAACAAGGCCTTGAACACGTCCGGTTCACTT
CTCGTCGACGCCAAAAATGGCACCTCCGCCAAGAGGACGCTCGAGGAGTG
CAAGAACATGTTGAAGGAAGCTGTTGCCGAGGTGCAGGCGGTGTCCTCGT
ACGTGGGCGATGCTGACATGCACACCATGGAGGACCGCGTGATGGAGCTC
AAGGCCTGGATTGGAAGCGTCATCAGTTATTCCACCACCTGCCTTGATAT
AATTGGCGAAAACGACCACAACCTCTACGAGGCATTGAAGGACCCCATCG
GCAACGCCTCTGCCAGCACAGACAATGCATTGGCCATCGTTGGTGAGATC
AGCAATGTCCTCGGCATGTTCGGTGTCAAAGTTAAGGACAAGGCCTTGAA
TGGCGGAGGAACTCAACGCCGGCTTTTGCAAAACGAGCTCAGCAGCGACG
GGATCCCGACCTGGTTCTCGGCTTCCGACCGCAAGCTCATGGGGTTGCAA
GACAACGGGAGGTTGAGGCCTCACATCGTTGTTGCCAAGGACGGGTCTGG
CCAGTACAAGAGCATCAACGACGCGCTTAAGGCGTACCCGTACGGACAGA
GAGGGCGATACATTATTTACGTCAAGGCCGGAGTTTACAATGAGTATGTT
TACGTGGACAAGAAAATGATCAACGTCTACATGTACGGAGATGGACCCAG
ATCCACCGTCGTGAYTGGAAGCAAGAGCGAAGCTGGAACCGGTGACAAAA
TCTCCACCAGTGGTACATTCCAAGTGTTTGGACCGGGTTTCATTGGAAGG
TCCATGGGAATCATTAACACCGCCGGTCCAGAGGCAAGGCCAGCCGTTGC
TCTCCGTACGGTCGGGGACCAAATCGCCTTCTTCAACTGCAGGATCAGCG
GATACCAAGACACCTTGTACATGCAGTCCGGCCGACAGTTCTTCCGAAAC
TGTGTTATCTCCGGACACGTGGACTACATCTTCGGTGACGCCCGCGCATA
CATTCAGAACTCGTTGATCATCGTGAGGAAGTCAACCAACCCGCAGCAGA
ATCAAGCCTTCATCACCGCTCCCGGAAGGCAGTTCAAGCACGAGATCGGC
GCCATCATCATCCACAACTGCAGGATCGTCCCCGAGCAGAAGCTCGTCCC
CACGAGGTTCGAGGTGAGGACATACTTGGGAAGGCCGTGGAAGCCCTACT
CCAGGGCTGTCTTCATGGAGAGCACTTTGGCAGACTTCATCAGGCCGGAG
GGATACTCCGCTTGGGACGGCAAGGCCGGGAACACCCAACACGCCTTCTT
CGGAGAGTTTAAGAACCGCGGCCCCGGTGCCAACCTTGCAAAGAGGGCCA
GGTGGAGTGGTGACGGCTTCTACGGAGAGATGAACAGGGCCACCGCCGTG
CAGTTCACAGCTCAACCCGCCCTGTTGGCTGATCGCTGGTTGAAATTTGC
TAACATTCCGTACCTCCCCGGCTTCATTAGTGCTGATGCCTAA
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protein sequence of MDP0000850802

>MDP0000850802 ID=MDP0000850802; Name=MDP0000850802; organism=Malus x domestica; type=polypeptide; length=581bp
MALNKKVVVSGISLILVVGAVIGAVVAVVHYQKKPGSESLTAQQKMVTQI
CNFTDYQQECQKSLGPVSQNNNAEFKDYVKAALMSISEEANKALNTSGSL
LVDAKNGTSAKRTLEECKNMLKEAVAEVQAVSSYVGDADMHTMEDRVMEL
KAWIGSVISYSTTCLDIIGENDHNLYEALKDPIGNASASTDNALAIVGEI
SNVLGMFGVKVKDKALNGGGTQRRLLQNELSSDGIPTWFSASDRKLMGLQ
DNGRLRPHIVVAKDGSGQYKSINDALKAYPYGQRGRYIIYVKAGVYNEYV
YVDKKMINVYMYGDGPRSTVVXGSKSEAGTGDKISTSGTFQVFGPGFIGR
SMGIINTAGPEARPAVALRTVGDQIAFFNCRISGYQDTLYMQSGRQFFRN
CVISGHVDYIFGDARAYIQNSLIIVRKSTNPQQNQAFITAPGRQFKHEIG
AIIIHNCRIVPEQKLVPTRFEVRTYLGRPWKPYSRAVFMESTLADFIRPE
GYSAWDGKAGNTQHAFFGEFKNRGPGANLAKRARWSGDGFYGEMNRATAV
QFTAQPALLADRWLKFANIPYLPGFISADA*
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mRNA from alignment at chr17:24632209..24633951+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000850802 ID=MDP0000850802; Name=MDP0000850802; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:24632209..24633951+ (Malus x domestica
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mRNA from alignment at MDC011450.174:12613..14355+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000850802 ID=MDP0000850802; Name=MDP0000850802; organism=Malus x domestica; type=mRNA; length=1743bp; location=Sequence derived from: MDC011450.174:12613..14355+ (Malus x domestica
ATGGCACTTAATAAAAAAGTGGTAGTATCGGGGATTTCCCTGATACTTGT
GGTTGGTGCGGTCATCGGAGCGGTGGTGGCCGTAGTCCACTACCAAAAGA
AGCCGGGAAGCGAGTCTCTAACAGCGCAGCAGAAGATGGTGACCCAAATC
TGTAATTTCACCGACTACCAACAGGAATGCCAGAAGAGCCTCGGCCCCGT
CTCACAAAATAACAACGCCGAGTTTAAGGACTACGTAAAGGCCGCATTGA
TGTCCATCTCTGAGGAGGCCAACAAGGCCTTGAACACGTCCGGTTCACTT
CTCGTCGACGCCAAAAATGGCACCTCCGCCAAGAGGACGCTCGAGGAGTG
CAAGAACATGTTGAAGGAAGCTGTTGCCGAGGTGCAGGCGGTGTCCTCGT
ACGTGGGCGATGCTGACATGCACACCATGGAGGACCGCGTGATGGAGCTC
AAGGCCTGGATTGGAAGCGTCATCAGTTATTCCACCACCTGCCTTGATAT
AATTGGCGAAAACGACCACAACCTCTACGAGGCATTGAAGGACCCCATCG
GCAACGCCTCTGCCAGCACAGACAATGCATTGGCCATCGTTGGTGAGATC
AGCAATGTCCTCGGCATGTTCGGTGTCAAAGTTAAGGACAAGGCCTTGAA
TGGCGGAGGAACTCAACGCCGGCTTTTGCAAAACGAGCTCAGCAGCGACG
GGATCCCGACCTGGTTCTCGGCTTCCGACCGCAAGCTCATGGGGTTGCAA
GACAACGGGAGGTTGAGGCCTCACATCGTTGTTGCCAAGGACGGGTCTGG
CCAGTACAAGAGCATCAACGACGCGCTTAAGGCGTACCCGTACGGACAGA
GAGGGCGATACATTATTTACGTCAAGGCCGGAGTTTACAATGAGTATGTT
TACGTGGACAAGAAAATGATCAACGTCTACATGTACGGAGATGGACCCAG
ATCCACCGTCGTGAYTGGAAGCAAGAGCGAAGCTGGAACCGGTGACAAAA
TCTCCACCAGTGGTACATTCCAAGTGTTTGGACCGGGTTTCATTGGAAGG
TCCATGGGAATCATTAACACCGCCGGTCCAGAGGCAAGGCCAGCCGTTGC
TCTCCGTACGGTCGGGGACCAAATCGCCTTCTTCAACTGCAGGATCAGCG
GATACCAAGACACCTTGTACATGCAGTCCGGCCGACAGTTCTTCCGAAAC
TGTGTTATCTCCGGACACGTGGACTACATCTTCGGTGACGCCCGCGCATA
CATTCAGAACTCGTTGATCATCGTGAGGAAGTCAACCAACCCGCAGCAGA
ATCAAGCCTTCATCACCGCTCCCGGAAGGCAGTTCAAGCACGAGATCGGC
GCCATCATCATCCACAACTGCAGGATCGTCCCCGAGCAGAAGCTCGTCCC
CACGAGGTTCGAGGTGAGGACATACTTGGGAAGGCCGTGGAAGCCCTACT
CCAGGGCTGTCTTCATGGAGAGCACTTTGGCAGACTTCATCAGGCCGGAG
GGATACTCCGCTTGGGACGGCAAGGCCGGGAACACCCAACACGCCTTCTT
CGGAGAGTTTAAGAACCGCGGCCCCGGTGCCAACCTTGCAAAGAGGGCCA
GGTGGAGTGGTGACGGCTTCTACGGAGAGATGAACAGGGCCACCGCCGTG
CAGTTCACAGCTCAACCCGCCCTGTTGGCTGATCGCTGGTTGAAATTTGC
TAACATTCCGTACCTCCCCGGCTTCATTAGTGCTGATGCCTAA
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Coding sequence (CDS) from alignment at MDC011450.174:12613..14355+

>MDP0000850802 ID=MDP0000850802; Name=MDP0000850802; organism=Malus x domestica; type=CDS; length=1743bp; location=Sequence derived from: MDC011450.174:12613..14355+ (Malus x domestica
ATGGCACTTAATAAAAAAGTGGTAGTATCGGGGATTTCCCTGATACTTGT
GGTTGGTGCGGTCATCGGAGCGGTGGTGGCCGTAGTCCACTACCAAAAGA
AGCCGGGAAGCGAGTCTCTAACAGCGCAGCAGAAGATGGTGACCCAAATC
TGTAATTTCACCGACTACCAACAGGAATGCCAGAAGAGCCTCGGCCCCGT
CTCACAAAATAACAACGCCGAGTTTAAGGACTACGTAAAGGCCGCATTGA
TGTCCATCTCTGAGGAGGCCAACAAGGCCTTGAACACGTCCGGTTCACTT
CTCGTCGACGCCAAAAATGGCACCTCCGCCAAGAGGACGCTCGAGGAGTG
CAAGAACATGTTGAAGGAAGCTGTTGCCGAGGTGCAGGCGGTGTCCTCGT
ACGTGGGCGATGCTGACATGCACACCATGGAGGACCGCGTGATGGAGCTC
AAGGCCTGGATTGGAAGCGTCATCAGTTATTCCACCACCTGCCTTGATAT
AATTGGCGAAAACGACCACAACCTCTACGAGGCATTGAAGGACCCCATCG
GCAACGCCTCTGCCAGCACAGACAATGCATTGGCCATCGTTGGTGAGATC
AGCAATGTCCTCGGCATGTTCGGTGTCAAAGTTAAGGACAAGGCCTTGAA
TGGCGGAGGAACTCAACGCCGGCTTTTGCAAAACGAGCTCAGCAGCGACG
GGATCCCGACCTGGTTCTCGGCTTCCGACCGCAAGCTCATGGGGTTGCAA
GACAACGGGAGGTTGAGGCCTCACATCGTTGTTGCCAAGGACGGGTCTGG
CCAGTACAAGAGCATCAACGACGCGCTTAAGGCGTACCCGTACGGACAGA
GAGGGCGATACATTATTTACGTCAAGGCCGGAGTTTACAATGAGTATGTT
TACGTGGACAAGAAAATGATCAACGTCTACATGTACGGAGATGGACCCAG
ATCCACCGTCGTGAYTGGAAGCAAGAGCGAAGCTGGAACCGGTGACAAAA
TCTCCACCAGTGGTACATTCCAAGTGTTTGGACCGGGTTTCATTGGAAGG
TCCATGGGAATCATTAACACCGCCGGTCCAGAGGCAAGGCCAGCCGTTGC
TCTCCGTACGGTCGGGGACCAAATCGCCTTCTTCAACTGCAGGATCAGCG
GATACCAAGACACCTTGTACATGCAGTCCGGCCGACAGTTCTTCCGAAAC
TGTGTTATCTCCGGACACGTGGACTACATCTTCGGTGACGCCCGCGCATA
CATTCAGAACTCGTTGATCATCGTGAGGAAGTCAACCAACCCGCAGCAGA
ATCAAGCCTTCATCACCGCTCCCGGAAGGCAGTTCAAGCACGAGATCGGC
GCCATCATCATCCACAACTGCAGGATCGTCCCCGAGCAGAAGCTCGTCCC
CACGAGGTTCGAGGTGAGGACATACTTGGGAAGGCCGTGGAAGCCCTACT
CCAGGGCTGTCTTCATGGAGAGCACTTTGGCAGACTTCATCAGGCCGGAG
GGATACTCCGCTTGGGACGGCAAGGCCGGGAACACCCAACACGCCTTCTT
CGGAGAGTTTAAGAACCGCGGCCCCGGTGCCAACCTTGCAAAGAGGGCCA
GGTGGAGTGGTGACGGCTTCTACGGAGAGATGAACAGGGCCACCGCCGTG
CAGTTCACAGCTCAACCCGCCCTGTTGGCTGATCGCTGGTTGAAATTTGC
TAACATTCCGTACCTCCCCGGCTTCATTAGTGCTGATGCCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification