MDP0000853517, MDP0000853517 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000853517
Unique NameMDP0000853517
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length696
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000853517_exon_1MDP0000853517_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000853517MDP0000853517Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184Ring fingercoord: 144..185
score: 7.5
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 144..186
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 142..189
score: 6.5
NoneNo IPR availablePANTHERPTHR22764FAMILY NOT NAMEDcoord: 53..226
score: 1
NoneNo IPR availablePFAMPF13639zf-RING_2coord: 143..187
score: 8.1
NoneNo IPR availableSEGsegsegcoord: 24..35
score: NAcoord: 92..102
score
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 115..192
score: 4.5
NoneNo IPR availableSEGsegsegcoord: 33..44
score
NoneNo IPR availableSEGsegsegcoord: 22..34
score
NoneNo IPR availableSEGsegsegcoord: 9..24
score
NoneNo IPR availableSEGsegsegcoord: 14..28
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000853517 ID=MDP0000853517; Name=MDP0000853517; organism=Malus x domestica; type=mRNA; length=696bp
ATGACTGCATCTACTTCCTCTACTCTTCGGCTCCTTCAGGAGGTCCTCGG
AGGCATCAACTCCAGAAGATTACTCCTACAAAACCCACTTTACCAACCAC
CAAACACCGCCTCTTCTCCAGTTTCTACAAACTCAATCGACTCACCGTCA
ACAGACCAATACCCTGGAGACAACAGCTTCGATGCTAACGTTGTTATGGT
CCTCTCAGTCCTTCTGTGTGCCCTAATTTGCTCTCTAGGGTTAAACTTCA
TCATCAAGTGTGCTTTGAGGTGCTCAAGTTTTGTATCCTCCTCGGAGTCT
AGATCAGCAGGCAACAACAACGCCACCTCAGCTAGGTTAGCCAACACAGG
AGTCAAGAAAAAAGCCCTAAAAACGTTCCCGACAGTGAATTACTCAGTTG
AGTTAAAACTGCCTGGCTTGGACACAGAGTGTGCSATCTGTCTATCTGAG
TTTACCGCCGGTGAGCGTGTACGCCTTCTGCCGAAGTGTAACCATGGTTT
CCATGTCCGCTGCATTGATAAGTGGTTGAGTTCGCACTCTTCGTGCCCAA
AATGCAGGCACAACTTGATCGAGACGTGTCAGAAGATTGTAGGCTACAGC
CAACCAAGCTCATCGGAACCAGTTCAAGAAACAATTGTAAGCATTGCACC
ACTTGAACCTGAAGGTTTCGTGCGTAGTTATAGGGGAATTAGCTAG
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protein sequence of MDP0000853517

>MDP0000853517 ID=MDP0000853517; Name=MDP0000853517; organism=Malus x domestica; type=polypeptide; length=232bp
MTASTSSTLRLLQEVLGGINSRRLLLQNPLYQPPNTASSPVSTNSIDSPS
TDQYPGDNSFDANVVMVLSVLLCALICSLGLNFIIKCALRCSSFVSSSES
RSAGNNNATSARLANTGVKKKALKTFPTVNYSVELKLPGLDTECAICLSE
FTAGERVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHNLIETCQKIVGYS
QPSSSEPVQETIVSIAPLEPEGFVRSYRGIS*
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mRNA from alignment at chr13:27594888..27595583-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000853517 ID=MDP0000853517; Name=MDP0000853517; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:27594888..27595583- (Malus x domestica
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mRNA from alignment at MDC004796.426:4015..4710-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000853517 ID=MDP0000853517; Name=MDP0000853517; organism=Malus x domestica; type=mRNA; length=696bp; location=Sequence derived from: MDC004796.426:4015..4710- (Malus x domestica
ATGACTGCATCTACTTCCTCTACTCTTCGGCTCCTTCAGGAGGTCCTCGG
AGGCATCAACTCCAGAAGATTACTCCTACAAAACCCACTTTACCAACCAC
CAAACACCGCCTCTTCTCCAGTTTCTACAAACTCAATCGACTCACCGTCA
ACAGACCAATACCCTGGAGACAACAGCTTCGATGCTAACGTTGTTATGGT
CCTCTCAGTCCTTCTGTGTGCCCTAATTTGCTCTCTAGGGTTAAACTTCA
TCATCAAGTGTGCTTTGAGGTGCTCAAGTTTTGTATCCTCCTCGGAGTCT
AGATCAGCAGGCAACAACAACGCCACCTCAGCTAGGTTAGCCAACACAGG
AGTCAAGAAAAAAGCCCTAAAAACGTTCCCGACAGTGAATTACTCAGTTG
AGTTAAAACTGCCTGGCTTGGACACAGAGTGTGCSATCTGTCTATCTGAG
TTTACCGCCGGTGAGCGTGTACGCCTTCTGCCGAAGTGTAACCATGGTTT
CCATGTCCGCTGCATTGATAAGTGGTTGAGTTCGCACTCTTCGTGCCCAA
AATGCAGGCACAACTTGATCGAGACGTGTCAGAAGATTGTAGGCTACAGC
CAACCAAGCTCATCGGAACCAGTTCAAGAAACAATTGTAAGCATTGCACC
ACTTGAACCTGAAGGTTTCGTGCGTAGTTATAGGGGAATTAGCTAG
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Coding sequence (CDS) from alignment at MDC004796.426:4015..4710-

>MDP0000853517 ID=MDP0000853517; Name=MDP0000853517; organism=Malus x domestica; type=CDS; length=696bp; location=Sequence derived from: MDC004796.426:4015..4710- (Malus x domestica
ATGACTGCATCTACTTCCTCTACTCTTCGGCTCCTTCAGGAGGTCCTCGG
AGGCATCAACTCCAGAAGATTACTCCTACAAAACCCACTTTACCAACCAC
CAAACACCGCCTCTTCTCCAGTTTCTACAAACTCAATCGACTCACCGTCA
ACAGACCAATACCCTGGAGACAACAGCTTCGATGCTAACGTTGTTATGGT
CCTCTCAGTCCTTCTGTGTGCCCTAATTTGCTCTCTAGGGTTAAACTTCA
TCATCAAGTGTGCTTTGAGGTGCTCAAGTTTTGTATCCTCCTCGGAGTCT
AGATCAGCAGGCAACAACAACGCCACCTCAGCTAGGTTAGCCAACACAGG
AGTCAAGAAAAAAGCCCTAAAAACGTTCCCGACAGTGAATTACTCAGTTG
AGTTAAAACTGCCTGGCTTGGACACAGAGTGTGCSATCTGTCTATCTGAG
TTTACCGCCGGTGAGCGTGTACGCCTTCTGCCGAAGTGTAACCATGGTTT
CCATGTCCGCTGCATTGATAAGTGGTTGAGTTCGCACTCTTCGTGCCCAA
AATGCAGGCACAACTTGATCGAGACGTGTCAGAAGATTGTAGGCTACAGC
CAACCAAGCTCATCGGAACCAGTTCAAGAAACAATTGTAAGCATTGCACC
ACTTGAACCTGAAGGTTTCGTGCGTAGTTATAGGGGAATTAGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding