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Transcript Overview
Name | MDP0000874373 |
Unique Name | MDP0000874373 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3558 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000874373 | MDP0000874373 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR004843 | Metallophosphoesterase domain | PFAM | PF00149 | Metallophos | coord: 232..445 score: 1.6 |
IPR008963 | Purple acid phosphatase-like, N-terminal | SUPERFAMILY | 49363 | Purple acid phosphatase, N-terminal domain | coord: 85..222 score: 4.8 |
IPR015914 | Purple acid phosphatase, N-terminal | GENE3D | 2.60.40.380 | no description | coord: 109..223 score: 5.1 |
None | No IPR available | GENE3D | 3.60.21.10 | no description | coord: 517..570 score: 1.4 |
None | No IPR available | PANTHER | PTHR22953 | FAMILY NOT NAMED | coord: 106..573 score: 9.5e |
None | No IPR available | PFAM | PF14008 | Metallophos_C | coord: 514..553 score: 1.5 |
None | No IPR available | SUPERFAMILY | 56300 | Metallo-dependent phosphatases | coord: 227..568 score: 2.9 |
None | No IPR available | SEG | seg | seg | coord: 63..75 score |
None | No IPR available | SEG | seg | seg | coord: 7..22 score: NAcoord: 73..85 score |
None | No IPR available | SEG | seg | seg | coord: 32..45 score |
None | No IPR available | SEG | seg | seg | coord: 59..75 score |
None | No IPR available | SEG | seg | seg | coord: 8..25 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; length=3558bp ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGTACAAAATTCAAAT TCTCAATCTTTGTGTTGTTTTGTTGATTTTTTTTTTTTTTTTTTTTTTAC ACTTTTCGGGATGAAAGTTGAATGGAATTGATGAACTGGGGTGGTTTTTG TTTGGTCAGGGGATGCCCAGATTGGTAAAACTGTGAGACCACTTGATCCT TCAACAGTTGGGAGTGAGGTGAGGTATGGGGAAGAAAGTGGCAAGTATAC GAGTGTGAAGAAAGGGGTTTCAGTTGTTTATAGTCAATTGTACCCTTTTG CTGGCCTCTTGAATTACACCTCTGCCATCATTCATCATGTCAGGATTGAT GGTATGGAAATCAATTTTGATTCTTTTAGTTGTAATGACTTGTTGATTGT TTGTTACTATAATGCACATAATGTTTTGCATCAGAAAATGGCAATCCGTT TCAGCGGAATTGCTAGTGTTATTCTTAATTTGATCCAATCGTTTGCTTGG AGGACAAGTTCTGATTTTAGTAAACGTAGCTTAATTGTTTGTACAACATC CATAATCGTTTGTTCTGTGCCAAATAGTACTACGAACAGCCTCTTCCTTC AGTTCGAGCATATACCCGAAAGAGAAAAAGAACCCTTAATTGAGTGAATT TGTTATTGTTGAGTATAGAAAAATTCTGATATTGGTGGGTGAATCAAAAT TTATTGTCAATTGATAATGGTGTTGACGGTTGCTCGATGTACCACATAAT TCACTAATTACAGACATGGATTTGTAATCCCATTAATGAAACCTATAAGT CCTATATTTCATGTTTCAATTTGAGGAAGCTCTCATCCCTTGGGGGTTGG CATATTTAAACATTCTGTCAATTTACATCCTGAAAGAATTCTGATATATT TGATTAAACTACTGTTAAATGGTAAATTTTGATATGAATGTCACAGGATG GTCGTTTAGTTACATAATTGAACACCTAGTAGACGATAAGCGAAGAAACT AGATCGAGTGTATCCGTACTGCTAAGATCAAGAGTTCCCCTTTGCTGTAG GTCTTAAACCGGGTACGAAATATTATTACAAGTGTGGGGATAGTTCTATC CCTGCTATGAGTCAAGAGCACGCCCTTGAAACTTTACCAGAGCCTGGCGA AAACACATATCCTCGTCGAATAGCTGTCGTTGGAGATTTGGGTCTCACTA GCAATACCAGTACAACCATTGATCATTTAATCCAGAATGATCCTTCAATG ATTTTAATGGTTGGGGACTTATGTTATGCAAACCAGTACCGTACGACTGG TGGGAAAGGAGCTTCATGCTTTTCATGTGCATTCCCAGATGCACCTATCA GAGAAACATATCAACCCCGCTGGGATGGGTGGGGAAGGTAAACTTTATGA ATTAGTATCTGAATGCCTTTACATCCTACCTCACTGTATGAGTTAGCATT TGTTTCAGTTTATGTTGAAGATTTGTCACAGAAATTAAAATTTGTCAATG TCAATCCATAATGTTAGTTAGCTAATCTGTTGGAGCTAAGTAGAAGCAAT ATGTAATAAATGCTGATATCTTAATTCTKACCAGTTTGTGATGCTKCATT TTCCTGAATTAGTTGGTTTTGATTAACATGGTTGAAGTGGAAACTCAGGT TCATGGAGCCTTTAACCTCGAGAGTTCCTATGATGGTTATTGAGGGCAAC CATGAGATTGAGCCCCAAGTTTCTGGAATCACTTTCGAATCCTATTTGAC AAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCTAAAAGTAACTTCTACT ATTCTTTTGATGCTGGAGGAGTACATTTTATCATGTTGGGAGCATATATT GACTACAATGCTACTGGTAATTGATGCCATAACGCTTCTTACTTATAAAT TCGCTACTAATAATKACAAATGATAAATTTAAAACATTCTGGTTTGGCTC TGCAATGCTGAATTATGAAAGCGTAAGCACYGGTGTACTTTTTTGGTACT GTTGGTTTTTAATTGTTTGTTATGTCCTATCTATGTTCATTCTAGGTGCT CAATATGCTTGGCTTAAAGATGATCTACATCGAGTAGACCGTACAGTGAC TCCCTGGCTCGTAGCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTT CTCACTATCAGGAATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTT TATCAATATGGTGTTGATATTGTTTTTTCTGGTCATGTAAGTTTAAAGTG ATTCTGTCTATAGTCTCGTAAACATTTGTATGCATATTTATTTGGCAAAA TTTGCCAATTTCATGTTATRTCGCAATATGCTTCTGTAATAGCAATACAT ATAACAGAAGTTACATCTGATTGATAACTACAGAGGTTTTTCTATACATG ACGTTATATTGGAGCCAGATACAAGATACCATGGCAGACAATTCGAAGAG GCCATAAAGATAAAAGTGGAAAACACCTTGTGATCTCACCATTGAAACTA ATTTCTTTGTAGATGTTGAATGTGTAATATGCTATCTGCTGTGCAGGTGC ATGCCTACGAACGGATGAATAGAGTATATAACTATACGTTGGATCCGTGC GGGCCTCTTTACATAACAGTTGGAGATGGTGGAAATATTGAAGAAGTTGA TGTTGATTTCGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGAGACAACA CACCGGAGTTTGGAGGGGTATGCCATTTGAACTTTTCTTCAGGGCCTGCT AAAGGCAATTTTTGTTGGAGCAAACAGCCGGAGTGGAGTGCTTTTAGAGA AAGCAGCTTTGGGCATGGAATTCTTGAGGTAAAACTTAGTAACATTGTTT TTACTTCTCTAGTTAAACAAACTTATCTCACACAATGTTTGATTTTAATT ATTAGTTTAACCATGATTAGCAAATGCAAATAGTACGTGTGCTTGAAACT TGCTTCTGAGGTGCAAACCATGAAAGTAGAATAGATCTAAGCGCGATCTT TCGTGATGTCTTCAGTGTTTTCTAGTTACACATTCATAACCGTCTTCCAT GACCTTTATATATCGAAATGCAGGTTGTGAATTCTACTTATGCTCTATGG ACTTGGCATCGGAATCAAGATACGTATAAGGAAGATAGCCACGGTGATCA AGTATACATTGTGCGACAACCTGAACTGTGCTCACGGTCTGCAAAGGTGA TTTCTTAA back to topprotein sequence of MDP0000874373 >MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=polypeptide; length=580bp MRIDSQLKSLNKRTQHDMIKLTHIPHHPQLEFSTSIFNAMPNCIPWVTLI IFLTVTEMAVALTQSPIPTTLEGPFVPATRRFDPSLRRGSDDLPMDHPRL KKKVTSNFPEQIALAISSPTAMWVSWVTGDAQIGKTVRPLDPSTVGSEVR YGEESGKYTSVKKGVSVVYSQLYPFAGLLNYTSAIIHHVRIDGLKPGTKY YYKCGDSSIPAMSQEHALETLPEPGENTYPRRIAVVGDLGLTSNTSTTID HLIQNDPSMILMVGDLCYANQYRTTGGKGASCFSCAFPDAPIRETYQPRW DGWGRFMEPLTSRVPMMVIEGNHEIEPQVSGITFESYLTRFAVPSEEXGS KSNFYYSFDAGGVHFIMLGAYIDYNATGAQYAWLKDDLHRVDRTVTPWLV AAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNR VYNYTLDPCGPLYITVGDGGNIEEVDVDFADDPGKCPSAGDNTPEFGGVC HLNFSSGPAKGNFCWSKQPEWSAFRESSFGHGILEVVNSTYALWTWHRNQ DTYKEDSHGDQVYIVRQPELCSRSAKVIS* back to topmRNA from alignment at chr13:31499204..31502761+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:31499204..31502761+ (Malus x domestica
back to topmRNA from alignment at MDC000782.427:1755..5312+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; length=3558bp; location=Sequence derived from: MDC000782.427:1755..5312+ (Malus x domestica ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA
TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA
CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC
ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT
TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC
CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC
AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC
TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGTACAAAATTCAAAT
TCTCAATCTTTGTGTTGTTTTGTTGATTTTTTTTTTTTTTTTTTTTTTAC
ACTTTTCGGGATGAAAGTTGAATGGAATTGATGAACTGGGGTGGTTTTTG
TTTGGTCAGGGGATGCCCAGATTGGTAAAACTGTGAGACCACTTGATCCT
TCAACAGTTGGGAGTGAGGTGAGGTATGGGGAAGAAAGTGGCAAGTATAC
GAGTGTGAAGAAAGGGGTTTCAGTTGTTTATAGTCAATTGTACCCTTTTG
CTGGCCTCTTGAATTACACCTCTGCCATCATTCATCATGTCAGGATTGAT
GGTATGGAAATCAATTTTGATTCTTTTAGTTGTAATGACTTGTTGATTGT
TTGTTACTATAATGCACATAATGTTTTGCATCAGAAAATGGCAATCCGTT
TCAGCGGAATTGCTAGTGTTATTCTTAATTTGATCCAATCGTTTGCTTGG
AGGACAAGTTCTGATTTTAGTAAACGTAGCTTAATTGTTTGTACAACATC
CATAATCGTTTGTTCTGTGCCAAATAGTACTACGAACAGCCTCTTCCTTC
AGTTCGAGCATATACCCGAAAGAGAAAAAGAACCCTTAATTGAGTGAATT
TGTTATTGTTGAGTATAGAAAAATTCTGATATTGGTGGGTGAATCAAAAT
TTATTGTCAATTGATAATGGTGTTGACGGTTGCTCGATGTACCACATAAT
TCACTAATTACAGACATGGATTTGTAATCCCATTAATGAAACCTATAAGT
CCTATATTTCATGTTTCAATTTGAGGAAGCTCTCATCCCTTGGGGGTTGG
CATATTTAAACATTCTGTCAATTTACATCCTGAAAGAATTCTGATATATT
TGATTAAACTACTGTTAAATGGTAAATTTTGATATGAATGTCACAGGATG
GTCGTTTAGTTACATAATTGAACACCTAGTAGACGATAAGCGAAGAAACT
AGATCGAGTGTATCCGTACTGCTAAGATCAAGAGTTCCCCTTTGCTGTAG
GTCTTAAACCGGGTACGAAATATTATTACAAGTGTGGGGATAGTTCTATC
CCTGCTATGAGTCAAGAGCACGCCCTTGAAACTTTACCAGAGCCTGGCGA
AAACACATATCCTCGTCGAATAGCTGTCGTTGGAGATTTGGGTCTCACTA
GCAATACCAGTACAACCATTGATCATTTAATCCAGAATGATCCTTCAATG
ATTTTAATGGTTGGGGACTTATGTTATGCAAACCAGTACCGTACGACTGG
TGGGAAAGGAGCTTCATGCTTTTCATGTGCATTCCCAGATGCACCTATCA
GAGAAACATATCAACCCCGCTGGGATGGGTGGGGAAGGTAAACTTTATGA
ATTAGTATCTGAATGCCTTTACATCCTACCTCACTGTATGAGTTAGCATT
TGTTTCAGTTTATGTTGAAGATTTGTCACAGAAATTAAAATTTGTCAATG
TCAATCCATAATGTTAGTTAGCTAATCTGTTGGAGCTAAGTAGAAGCAAT
ATGTAATAAATGCTGATATCTTAATTCTKACCAGTTTGTGATGCTKCATT
TTCCTGAATTAGTTGGTTTTGATTAACATGGTTGAAGTGGAAACTCAGGT
TCATGGAGCCTTTAACCTCGAGAGTTCCTATGATGGTTATTGAGGGCAAC
CATGAGATTGAGCCCCAAGTTTCTGGAATCACTTTCGAATCCTATTTGAC
AAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCTAAAAGTAACTTCTACT
ATTCTTTTGATGCTGGAGGAGTACATTTTATCATGTTGGGAGCATATATT
GACTACAATGCTACTGGTAATTGATGCCATAACGCTTCTTACTTATAAAT
TCGCTACTAATAATKACAAATGATAAATTTAAAACATTCTGGTTTGGCTC
TGCAATGCTGAATTATGAAAGCGTAAGCACYGGTGTACTTTTTTGGTACT
GTTGGTTTTTAATTGTTTGTTATGTCCTATCTATGTTCATTCTAGGTGCT
CAATATGCTTGGCTTAAAGATGATCTACATCGAGTAGACCGTACAGTGAC
TCCCTGGCTCGTAGCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTT
CTCACTATCAGGAATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTT
TATCAATATGGTGTTGATATTGTTTTTTCTGGTCATGTAAGTTTAAAGTG
ATTCTGTCTATAGTCTCGTAAACATTTGTATGCATATTTATTTGGCAAAA
TTTGCCAATTTCATGTTATRTCGCAATATGCTTCTGTAATAGCAATACAT
ATAACAGAAGTTACATCTGATTGATAACTACAGAGGTTTTTCTATACATG
ACGTTATATTGGAGCCAGATACAAGATACCATGGCAGACAATTCGAAGAG
GCCATAAAGATAAAAGTGGAAAACACCTTGTGATCTCACCATTGAAACTA
ATTTCTTTGTAGATGTTGAATGTGTAATATGCTATCTGCTGTGCAGGTGC
ATGCCTACGAACGGATGAATAGAGTATATAACTATACGTTGGATCCGTGC
GGGCCTCTTTACATAACAGTTGGAGATGGTGGAAATATTGAAGAAGTTGA
TGTTGATTTCGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGAGACAACA
CACCGGAGTTTGGAGGGGTATGCCATTTGAACTTTTCTTCAGGGCCTGCT
AAAGGCAATTTTTGTTGGAGCAAACAGCCGGAGTGGAGTGCTTTTAGAGA
AAGCAGCTTTGGGCATGGAATTCTTGAGGTAAAACTTAGTAACATTGTTT
TTACTTCTCTAGTTAAACAAACTTATCTCACACAATGTTTGATTTTAATT
ATTAGTTTAACCATGATTAGCAAATGCAAATAGTACGTGTGCTTGAAACT
TGCTTCTGAGGTGCAAACCATGAAAGTAGAATAGATCTAAGCGCGATCTT
TCGTGATGTCTTCAGTGTTTTCTAGTTACACATTCATAACCGTCTTCCAT
GACCTTTATATATCGAAATGCAGGTTGTGAATTCTACTTATGCTCTATGG
ACTTGGCATCGGAATCAAGATACGTATAAGGAAGATAGCCACGGTGATCA
AGTATACATTGTGCGACAACCTGAACTGTGCTCACGGTCTGCAAAGGTGA
TTTCTTAA back to topCoding sequence (CDS) from alignment at MDC000782.427:1755..5312+ >MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=CDS; length=1740bp; location=Sequence derived from: MDC000782.427:1755..5312+ (Malus x domestica ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGGGATGCCCAGATTG GTAAAACTGTGAGACCACTTGATCCTTCAACAGTTGGGAGTGAGGTGAGG TATGGGGAAGAAAGTGGCAAGTATACGAGTGTGAAGAAAGGGGTTTCAGT TGTTTATAGTCAATTGTACCCTTTTGCTGGCCTCTTGAATTACACCTCTG CCATCATTCATCATGTCAGGATTGATGGTCTTAAACCGGGTACGAAATAT TATTACAAGTGTGGGGATAGTTCTATCCCTGCTATGAGTCAAGAGCACGC CCTTGAAACTTTACCAGAGCCTGGCGAAAACACATATCCTCGTCGAATAG CTGTCGTTGGAGATTTGGGTCTCACTAGCAATACCAGTACAACCATTGAT CATTTAATCCAGAATGATCCTTCAATGATTTTAATGGTTGGGGACTTATG TTATGCAAACCAGTACCGTACGACTGGTGGGAAAGGAGCTTCATGCTTTT CATGTGCATTCCCAGATGCACCTATCAGAGAAACATATCAACCCCGCTGG GATGGGTGGGGAAGGTTCATGGAGCCTTTAACCTCGAGAGTTCCTATGAT GGTTATTGAGGGCAACCATGAGATTGAGCCCCAAGTTTCTGGAATCACTT TCGAATCCTATTTGACAAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCT AAAAGTAACTTCTACTATTCTTTTGATGCTGGAGGAGTACATTTTATCAT GTTGGGAGCATATATTGACTACAATGCTACTGGTGCTCAATATGCTTGGC TTAAAGATGATCTACATCGAGTAGACCGTACAGTGACTCCCTGGCTCGTA GCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTTCTCACTATCAGGA ATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTTTATCAATATGGTG TTGATATTGTTTTTTCTGGTCATGTGCATGCCTACGAACGGATGAATAGA GTATATAACTATACGTTGGATCCGTGCGGGCCTCTTTACATAACAGTTGG AGATGGTGGAAATATTGAAGAAGTTGATGTTGATTTCGCTGATGACCCTG GAAAGTGTCCTTCAGCTGGAGACAACACACCGGAGTTTGGAGGGGTATGC CATTTGAACTTTTCTTCAGGGCCTGCTAAAGGCAATTTTTGTTGGAGCAA ACAGCCGGAGTGGAGTGCTTTTAGAGAAAGCAGCTTTGGGCATGGAATTC TTGAGGTTGTGAATTCTACTTATGCTCTATGGACTTGGCATCGGAATCAA GATACGTATAAGGAAGATAGCCACGGTGATCAAGTATACATTGTGCGACA ACCTGAACTGTGCTCACGGTCTGCAAAGGTGATTTCTTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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