MDP0000899702, MDP0000899702 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000899702
Unique NameMDP0000899702
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2079
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000899702_exon_1MDP0000899702_exon_1Malus x domesticaCDS


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 184..212
score: 9.6e-06coord: 255..284
score: 4.2e-05coord: 359..381
score: 0.0045coord: 459..484
score: 0.0023coord: 525..554
score:
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 150..179
score: 7.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 284..331
score: 1.7e-10coord: 384..431
score: 6.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 124..149
score:
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756PPR: pentatricopeptide repeat domaincoord: 154..181
score: 3.2e-08coord: 257..286
score: 0.00049coord: 286..320
score: 5.6e-06coord: 387..420
score: 3.8e-07coord: 460..483
score: 0.0
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 41..75
score: 6.193coord: 151..185
score: 11.641coord: 120..150
score: 8.024coord: 85..119
score: 6.895coord: 186..216
score: 6.237coord: 284..318
score: 11.718coord: 253..283
score: 10.095coord: 218..252
score: 5.152coord: 319..353
score: 7.640coord: 385..419
score: 12.134coord: 354..384
score: 6.752coord: 456..486
score: 8.309coord: 420..450
score: 7.114coord: 522..556
score: 8
IPR011990Tetratricopeptide-like helicalGENE3D1.25.40.10no descriptioncoord: 459..539
score: 2.1
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 48.
NoneNo IPR availablePANTHERPTHR24015:SF147SUBFAMILY NOT NAMEDcoord: 48.
NoneNo IPR availablePFAMPF14432DYW_deaminasecoord: 569..682
score: 5.1
NoneNo IPR availableSUPERFAMILY48452TPR-likecoord: 356..537
score: 2.8
NoneNo IPR availableSEGsegsegcoord: 20..36
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000899702 ID=MDP0000899702; Name=MDP0000899702; organism=Malus x domestica; type=mRNA; length=2079bp
ATGAAATCCTTGAATCTAAAAGTTTCCAGGCATTTTTCTCTGCTATTATT
TAACAGAACCCATTCATCATCTTCTCAAACTTCCCAACTAAATAAACCCC
AAATTCAGAAAACCTTCTTCAAATCCAACACCAAAGACGCCCTCATAAGC
CGCTTATGCAATGACGGAAAATTCAAAGAAGCCATCGACATCCTCTGCCA
CCAAAGGCGCTTATCAGAAGCAGTTCAGTTGCTCCACCACATAGACAAAC
CCTCTGCTTCCATATACTCCACCCTCTTGCAGCTTTGTCTTCACCAACGA
GCTCTTGCGCAGGGCAAATTGGTCCACGCCCACACCAGAGCCTCCGGGTT
CGTGCCCGGGATGTTCATTTGTAACCGTCTTATTGRCATGTATGCGAAAT
GCGGGAGCATTGTGGATGCCCAGATGGTGTTTGATGAAATGCCTGAGAGG
GATTTGTGTTCTTGGAATACTATGATTTCTGGGTATGCGAAAGTGGGGCA
GCTTGCTGAAGCTAGGAAACTGTTTGATGAAATGCCTCAGAGAGATAATT
TTTCTTGGACTGCGGTGATATCAGGATATGTTCGTCAYGATARACCAAAA
GATGCTTTGTGGTTGTATAGGATGATGCAGAGGAGCGAGAATTCTAAATC
TAATAAGTTCACGGTGTCTAGCGTTCTTGCTGCTTCAGCAGCCATTCAGA
GTTTGAGAATGGGGAAGGAGATTCATGGTTATATAATGCGAACTGGGCTG
GACTCRGATGAGGTGGTTTGGAGTGCCTTATCGGATATGTATGGGAAATG
TGGGAGTATAGAGGAAGCTAGGCGCATTTTTGATAAGATGGTGAATCGAG
ATATTGTTACATGGACAGCAATGATTGATAGATACTTTGAGGATGGGARG
AAGGAAGAGGGATTTTCTCTGTTCTCGGAGTTGATGAAGTCCGGCATTAG
ACCGAACGAGTTCACCTTTGCAGGGGTTTTGAATGCCTGCGCTCAGCATG
CTGCTGAGAACTTGGGCAAGCAGGTTCACGGGTACATGACGCGGATTGGA
TTTGACCCCTTGTCTTTTGCAGCAAGTGCACTTGTTCATATGTATTCAAA
GTGTGGAAACATTGAGAATGCGAATAAGGTGTTTAATGAGATGCCCTGCC
CAGATGTGGTTTCATGGACTTCCCTGATTGCTGGACATGCTCAGAATGGT
CAACCTAATGAGGCCCTTCAGTTGTTTAAGTTACTACTTGATTCAGGTAC
TAAGCCTGATCACATTACCTTTGTAGGTGTTCTTTCCGCATGTACTCATG
CTGGTTTAGTTGATAAGGGACTTGAATACTTCCATTCAATTAAGGCAAAA
CATGGGTTAACGCATACCGCGGACCACTATTCCTGTGTAGTTGATTTATT
GGCCCGAGCAGGTCGATTTGAAGAAGCTAAGAATATTATTAATGAAATGC
CAATGAAACCAGATAAGTACTTGTGGGCTTCCTTAATCGGTGGCTGCAGA
ATTCATGGAAACCTCACACTCGCAAAGCGAGCTGCAGATGCGTTGTTTGA
GATAGAACCTGAGAATCCAACTACTTATATTACTCTGGCCAACATTTATG
CTACTGCTGGTATGTGGGGTGAAGTAACAGAGGTCAGAAAGATGATGGAT
AAAAGAGGGCTGATAAAGAAACCAGGTTTGAGTTGGATCGAGATCAAGAG
AGAGGTGCATKTTTTCTTAGTGGGAGATACGTCTCACCCGAGATATGATG
AAATASATCACTATTTGCATGAGCTTTCGAAGAGGATGAAGGAAGAAGGG
TATGTCCCCGACACGAATTTTGTGCTGCATGATGTTGAAGAGGAGCAGAA
AGAGCAGAACCTCTCCTACCACRGTGAAAAGCTCGCCGTTGCGTTTGGCA
TTATTTCTACTCCGCCGGGAACACCGATCAAGGTTTTTAAGAACTTAAGA
ACATGTGTAGATTGTCATACTGCGATTAAGTTTGTTTCTAAGATTGCTAA
CAGAAAAATTATAGTCCGGGATTCAAATCGGTTCCATTGTTTTGAGGGCG
GGATCTGTTCATGTCGAGATTATTGGTGA
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mRNA from alignment at chr15:21726776..21728854-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000899702 ID=MDP0000899702; Name=MDP0000899702; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:21726776..21728854- (Malus x domestica
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mRNA from alignment at MDC015512.195:10751..12829-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000899702 ID=MDP0000899702; Name=MDP0000899702; organism=Malus x domestica; type=mRNA; length=2079bp; location=Sequence derived from: MDC015512.195:10751..12829- (Malus x domestica
ATGAAATCCTTGAATCTAAAAGTTTCCAGGCATTTTTCTCTGCTATTATT
TAACAGAACCCATTCATCATCTTCTCAAACTTCCCAACTAAATAAACCCC
AAATTCAGAAAACCTTCTTCAAATCCAACACCAAAGACGCCCTCATAAGC
CGCTTATGCAATGACGGAAAATTCAAAGAAGCCATCGACATCCTCTGCCA
CCAAAGGCGCTTATCAGAAGCAGTTCAGTTGCTCCACCACATAGACAAAC
CCTCTGCTTCCATATACTCCACCCTCTTGCAGCTTTGTCTTCACCAACGA
GCTCTTGCGCAGGGCAAATTGGTCCACGCCCACACCAGAGCCTCCGGGTT
CGTGCCCGGGATGTTCATTTGTAACCGTCTTATTGRCATGTATGCGAAAT
GCGGGAGCATTGTGGATGCCCAGATGGTGTTTGATGAAATGCCTGAGAGG
GATTTGTGTTCTTGGAATACTATGATTTCTGGGTATGCGAAAGTGGGGCA
GCTTGCTGAAGCTAGGAAACTGTTTGATGAAATGCCTCAGAGAGATAATT
TTTCTTGGACTGCGGTGATATCAGGATATGTTCGTCAYGATARACCAAAA
GATGCTTTGTGGTTGTATAGGATGATGCAGAGGAGCGAGAATTCTAAATC
TAATAAGTTCACGGTGTCTAGCGTTCTTGCTGCTTCAGCAGCCATTCAGA
GTTTGAGAATGGGGAAGGAGATTCATGGTTATATAATGCGAACTGGGCTG
GACTCRGATGAGGTGGTTTGGAGTGCCTTATCGGATATGTATGGGAAATG
TGGGAGTATAGAGGAAGCTAGGCGCATTTTTGATAAGATGGTGAATCGAG
ATATTGTTACATGGACAGCAATGATTGATAGATACTTTGAGGATGGGARG
AAGGAAGAGGGATTTTCTCTGTTCTCGGAGTTGATGAAGTCCGGCATTAG
ACCGAACGAGTTCACCTTTGCAGGGGTTTTGAATGCCTGCGCTCAGCATG
CTGCTGAGAACTTGGGCAAGCAGGTTCACGGGTACATGACGCGGATTGGA
TTTGACCCCTTGTCTTTTGCAGCAAGTGCACTTGTTCATATGTATTCAAA
GTGTGGAAACATTGAGAATGCGAATAAGGTGTTTAATGAGATGCCCTGCC
CAGATGTGGTTTCATGGACTTCCCTGATTGCTGGACATGCTCAGAATGGT
CAACCTAATGAGGCCCTTCAGTTGTTTAAGTTACTACTTGATTCAGGTAC
TAAGCCTGATCACATTACCTTTGTAGGTGTTCTTTCCGCATGTACTCATG
CTGGTTTAGTTGATAAGGGACTTGAATACTTCCATTCAATTAAGGCAAAA
CATGGGTTAACGCATACCGCGGACCACTATTCCTGTGTAGTTGATTTATT
GGCCCGAGCAGGTCGATTTGAAGAAGCTAAGAATATTATTAATGAAATGC
CAATGAAACCAGATAAGTACTTGTGGGCTTCCTTAATCGGTGGCTGCAGA
ATTCATGGAAACCTCACACTCGCAAAGCGAGCTGCAGATGCGTTGTTTGA
GATAGAACCTGAGAATCCAACTACTTATATTACTCTGGCCAACATTTATG
CTACTGCTGGTATGTGGGGTGAAGTAACAGAGGTCAGAAAGATGATGGAT
AAAAGAGGGCTGATAAAGAAACCAGGTTTGAGTTGGATCGAGATCAAGAG
AGAGGTGCATKTTTTCTTAGTGGGAGATACGTCTCACCCGAGATATGATG
AAATASATCACTATTTGCATGAGCTTTCGAAGAGGATGAAGGAAGAAGGG
TATGTCCCCGACACGAATTTTGTGCTGCATGATGTTGAAGAGGAGCAGAA
AGAGCAGAACCTCTCCTACCACRGTGAAAAGCTCGCCGTTGCGTTTGGCA
TTATTTCTACTCCGCCGGGAACACCGATCAAGGTTTTTAAGAACTTAAGA
ACATGTGTAGATTGTCATACTGCGATTAAGTTTGTTTCTAAGATTGCTAA
CAGAAAAATTATAGTCCGGGATTCAAATCGGTTCCATTGTTTTGAGGGCG
GGATCTGTTCATGTCGAGATTATTGGTGA
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Coding sequence (CDS) from alignment at MDC015512.195:10751..12829-

>MDP0000899702 ID=MDP0000899702; Name=MDP0000899702; organism=Malus x domestica; type=CDS; length=2079bp; location=Sequence derived from: MDC015512.195:10751..12829- (Malus x domestica
ATGAAATCCTTGAATCTAAAAGTTTCCAGGCATTTTTCTCTGCTATTATT
TAACAGAACCCATTCATCATCTTCTCAAACTTCCCAACTAAATAAACCCC
AAATTCAGAAAACCTTCTTCAAATCCAACACCAAAGACGCCCTCATAAGC
CGCTTATGCAATGACGGAAAATTCAAAGAAGCCATCGACATCCTCTGCCA
CCAAAGGCGCTTATCAGAAGCAGTTCAGTTGCTCCACCACATAGACAAAC
CCTCTGCTTCCATATACTCCACCCTCTTGCAGCTTTGTCTTCACCAACGA
GCTCTTGCGCAGGGCAAATTGGTCCACGCCCACACCAGAGCCTCCGGGTT
CGTGCCCGGGATGTTCATTTGTAACCGTCTTATTGRCATGTATGCGAAAT
GCGGGAGCATTGTGGATGCCCAGATGGTGTTTGATGAAATGCCTGAGAGG
GATTTGTGTTCTTGGAATACTATGATTTCTGGGTATGCGAAAGTGGGGCA
GCTTGCTGAAGCTAGGAAACTGTTTGATGAAATGCCTCAGAGAGATAATT
TTTCTTGGACTGCGGTGATATCAGGATATGTTCGTCAYGATARACCAAAA
GATGCTTTGTGGTTGTATAGGATGATGCAGAGGAGCGAGAATTCTAAATC
TAATAAGTTCACGGTGTCTAGCGTTCTTGCTGCTTCAGCAGCCATTCAGA
GTTTGAGAATGGGGAAGGAGATTCATGGTTATATAATGCGAACTGGGCTG
GACTCRGATGAGGTGGTTTGGAGTGCCTTATCGGATATGTATGGGAAATG
TGGGAGTATAGAGGAAGCTAGGCGCATTTTTGATAAGATGGTGAATCGAG
ATATTGTTACATGGACAGCAATGATTGATAGATACTTTGAGGATGGGARG
AAGGAAGAGGGATTTTCTCTGTTCTCGGAGTTGATGAAGTCCGGCATTAG
ACCGAACGAGTTCACCTTTGCAGGGGTTTTGAATGCCTGCGCTCAGCATG
CTGCTGAGAACTTGGGCAAGCAGGTTCACGGGTACATGACGCGGATTGGA
TTTGACCCCTTGTCTTTTGCAGCAAGTGCACTTGTTCATATGTATTCAAA
GTGTGGAAACATTGAGAATGCGAATAAGGTGTTTAATGAGATGCCCTGCC
CAGATGTGGTTTCATGGACTTCCCTGATTGCTGGACATGCTCAGAATGGT
CAACCTAATGAGGCCCTTCAGTTGTTTAAGTTACTACTTGATTCAGGTAC
TAAGCCTGATCACATTACCTTTGTAGGTGTTCTTTCCGCATGTACTCATG
CTGGTTTAGTTGATAAGGGACTTGAATACTTCCATTCAATTAAGGCAAAA
CATGGGTTAACGCATACCGCGGACCACTATTCCTGTGTAGTTGATTTATT
GGCCCGAGCAGGTCGATTTGAAGAAGCTAAGAATATTATTAATGAAATGC
CAATGAAACCAGATAAGTACTTGTGGGCTTCCTTAATCGGTGGCTGCAGA
ATTCATGGAAACCTCACACTCGCAAAGCGAGCTGCAGATGCGTTGTTTGA
GATAGAACCTGAGAATCCAACTACTTATATTACTCTGGCCAACATTTATG
CTACTGCTGGTATGTGGGGTGAAGTAACAGAGGTCAGAAAGATGATGGAT
AAAAGAGGGCTGATAAAGAAACCAGGTTTGAGTTGGATCGAGATCAAGAG
AGAGGTGCATKTTTTCTTAGTGGGAGATACGTCTCACCCGAGATATGATG
AAATASATCACTATTTGCATGAGCTTTCGAAGAGGATGAAGGAAGAAGGG
TATGTCCCCGACACGAATTTTGTGCTGCATGATGTTGAAGAGGAGCAGAA
AGAGCAGAACCTCTCCTACCACRGTGAAAAGCTCGCCGTTGCGTTTGGCA
TTATTTCTACTCCGCCGGGAACACCGATCAAGGTTTTTAAGAACTTAAGA
ACATGTGTAGATTGTCATACTGCGATTAAGTTTGTTTCTAAGATTGCTAA
CAGAAAAATTATAGTCCGGGATTCAAATCGGTTCCATTGTTTTGAGGGCG
GGATCTGTTCATGTCGAGATTATTGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding