MDP0000911947, MDP0000911947 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000911947
Unique NameMDP0000911947
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2049
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000911947_exon_1MDP0000911947_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000911947MDP0000911947Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 148..173
score: 0.0026coord: 520..544
score:
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 173..219
score: 2.5e-12coord: 274..322
score: 1.1e-11coord: 376..423
score: 2.6
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756PPR: pentatricopeptide repeat domaincoord: 148..174
score: 0.00032coord: 176..209
score: 6.3e-07coord: 277..310
score: 4.5e-05coord: 350..378
score: 1.4e-06coord: 378..411
score: 0.0
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 108..142
score: 6.566coord: 174..208
score: 12.781coord: 143..173
score: 8.572coord: 275..309
score: 11.904coord: 244..274
score: 6.829coord: 376..410
score: 11.926coord: 345..375
score: 8.802coord: 310..344
score: 8.177coord: 411..445
score: 9.339coord: 446..480
score: 6.259coord: 512..546
score: 7
IPR011990Tetratricopeptide-like helicalGENE3D1.25.40.10no descriptioncoord: 349..421
score: 1.1
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 104..678
score: 2.2e
NoneNo IPR availablePANTHERPTHR24015:SF80SUBFAMILY NOT NAMEDcoord: 104..678
score: 2.2e
NoneNo IPR availablePFAMPF14432DYW_deaminasecoord: 555..672
score: 2.2
NoneNo IPR availableSEGsegsegcoord: 60..70
score
NoneNo IPR availableSEGsegsegcoord: 73..86
score
NoneNo IPR availableSEGsegsegcoord: 33..43
score
NoneNo IPR availableSEGsegsegcoord: 32..44
score
NoneNo IPR availableSEGsegsegcoord: 25..35
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; length=2049bp
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG
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protein sequence of MDP0000911947

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=polypeptide; length=683bp
MNRCNLMKRHILGSRSKALLFLYNYNNTAAAVGIQKLFSLSARFGTLSAT
RASCAKLIGDEDSETSEDEDWFPSRIIQDKDLLRSSPHISGTGLHVLDLV
NCGSLEADRTLYNKLLHRCTQTAQLKQARIVHSHILTSQFKDDLPIRNTI
LHMYVKCGSLDDARNLFNQMPHKDLVTWTALISGYSQHDRPQDALVLFPE
MLRHGLEPNQFTLSSLLKASGAVSDDNHGRQLHTYCFKYGLDSNVYVGTA
LVDMYARCGHMDESQLVFDALDTKNEVSWNALIAGHARKAQGEHALRLFW
KMLREGFKPTHFTYSSVLTACASAGSLEQGKWVHAHMIKSVVTLVAFVGN
TLLDMYAKSGSIEDAKKVFDRMVRRDVVSWNSMLTGYAQHGFGKETVQRF
EEMLRIGIQPNDITFLCVLTACSHAGLLDEGQYYFDLMKQYNIEPQVSHY
VTIVDLLGRGNLLDRAEKFIREMPIEPTAAVWGALLGACRMHKNIELGAY
AAERSFELDPHDSGPHVILSNIYASAGRWIDAAKVRKMMKEGGVKKEPAC
SWVDIENAVHMFVANDDAHPQRVEILRMWEMISMKIKEVGYVPDTSHVLF
YVDQQEREVKLQYHSEKLALAFAVLNTPPGSTIRIKKNIRVCGDCHSAIK
FVSKVEGREIIVRDTNRFHHFRDGSCSCGDYW*
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mRNA from alignment at chr5:28791193..28793241-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:28791193..28793241- (Malus x domestica
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mRNA from alignment at MDC002820.150:47111..49159-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; length=2049bp; location=Sequence derived from: MDC002820.150:47111..49159- (Malus x domestica
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG
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Coding sequence (CDS) from alignment at MDC002820.150:47111..49159-

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=CDS; length=2049bp; location=Sequence derived from: MDC002820.150:47111..49159- (Malus x domestica
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding