RNA Datasets (as of May 2018)
|
Species
|
Study Accession
|
Cultivar
|
Instrument
|
Reference
|
|---|---|---|---|---|
| Malus domestica | SRP125281 |
Idared
Red Delicious
Northern Spy
MacIntosh
Golden Delicious
Honeycrisp
Empire
Fuji
Gala
|
Illumina HiSeq 2000 | Pratas et al. 2018 |
| Malus domestica | SRP134054 | BGISEQ-500 | Unpublished; Shandong agriculture university | |
| Malus domestica | SRP139480 | Illumina HiSeq 2000 | An et al. 2018 | |
|
Malus domestica
|
Yanfu 6
Yanfu
Fuji
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Yanfu 3
Yanfu 8
Nagafu 2
Ralls
Shanonghong
|
GISEQ-500
|
Unpublished; Shandong Agricultural
|
|
|
Malus domestica
|
Gelden Delicious
|
Illumina HiSeq 2500
|
Unpublished; Foundation Edmund Mach
|
|
|
Malus domestica
|
McIntosh
|
Illumina HiSeq 2500
|
||
|
Malus domestica x Malus sieversii
|
Malus sieversii f. niedzwetzkyana x M. domestica Fuji
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Starking Delicious
|
Illumina HiSeq 2000
|
Unpublished; Nanjing Agriculture University
|
|
|
Malus domestica
|
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
Saika
|
454 GS FLX
|
Unpublished; GEO
|
|
|
Malus domestica
|
Royal Delicious
|
Illumina Genome Analyzer IIx
|
||
|
Malus domestica
|
Royal Delicious
|
Illumina Genome Analyzer IIx
|
||
|
Malus domestica
|
Starking Delicious
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
M9
M27
M793
|
Illumina HiSeq 2000
|
Unpublished; Plant and Food Research Ltd
|
|
|
Malus domestica
|
M26
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Granny Smith
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
Greensleeves
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
HiSeq X Ten
|
||
|
Malus domestica
|
|
Illumina HiSeq 2500
|
Unpublished; GEO
|
|
|
Malus domestica
|
Honeycrisp
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
M26
|
Illumina MiSeq
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished; Cornell University
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished: Zurich University of Applied Sciences
|
|
|
Malus domestica
|
Malus robusta?Rehd
|
Illumina HiSeq 2000
|
Unpublished; Northwest A&W University
|
|
|
Malus domestica
|
Gala
|
Illumina HiSeq 2500
|
Unpublished; Adam Mickiewicz University in Poznan
|
|
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Granny Smith
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
|
AB 5500xl Genetic Analyzer
|
Unpublished; Adam Mickiewicz University in Poznan
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiScanSQ
|
||
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Procats28
|
454 GS FLX Titanium
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina Genome Analyzer II
|
||
|
Malus domestica
|
Honeycrisp
Gala
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Empire
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Procats28
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
McIntosh
Wijick
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Gala
|
Illumina Genome Analyzer IIx
|
||
|
Malus domestica
|
Fuji
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Sweet Delicious
Rome Beauty Law
PI323617
Novosibirski Sweet
Jonathan
Granny Smith
Fuji
Empire
Cox's Orange Pippin
Britegold
|
Illumina HiSeq 2000
|
Unpublished; Cornell University
|
|
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
St Edmund's Pippin
Reinette Parmentier'
Patte de loup
Gala
CRAW/Ma/AF42
CRAW/Ma/AG94
|
Illumina MiSeq
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
DNA Datasets (as of May 2018)
|
Species
|
Study Accession
|
Cultivar
|
Instrument
|
Reference
|
|---|---|---|---|---|
| Malus domestica | SRP103167 | Gala | Illumina HiSeq 2000 | Xie et al. 2017 |
|
Malus domestica
|
Golden Delicious
|
Illumina MiSeq
|
||
|
Malus domestica
|
Qin guan
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
Nagafu No. 2
Qinguan
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Anna
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
G41
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
Heritage Collection
|
Illumina HiSeq 2000
|
Unpublished; Vineland Research and Innovation Centre
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished;GEO
|
|
|
Malus domestica
|
Golden Delicious
|
HiSeq X Ten
|
||
|
Malus domestica
|
Fuji
|
Illumina Genome Analyzer IIx
|
Unpublished; NIAS
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished; INRA-IRHS
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina MiSeq
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2500
|
||
|
Malus domestica
|
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Golden Delicious
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Galicia
|
Illumina HiSeq 2000
|
Unpublished; Michigan State University
|
|
|
Malus domestica
|
Su Shuai
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
McIntosh
Wijcik
|
Illumina HiSeq 2000
|
||
|
Malus domestica
|
Golden Delicious
|
454 GS FLX
|
Unpublished; Michigan State University
|