ppa012179m, ppa012179m (mRNA) Prunus persica

Transcript Overview


Name	ppa012179m
Unique Name	ppa012179m
Type	mRNA
Organism	Prunus persica (Peach)
Sequence length	706

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_4	supercontig	scaffold_4:6287959..6288664 -	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Prunus persica Whole Genome v1.0 Assembly & Annotation	2012-01-16
InterProScan of Prunus persica Whole Genome v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Vitis vinifera	2012-07-23
BLASTx of Prunus persica v1.0 vs UniProt TrEMBL	2012-07-23
BLASTx of Prunus persica v1.0 vs UniProt Swiss-Prot	2012-07-23
BLASTx of Prunus persica v1.0 vs TAIR 10	2012-07-23
BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs NCBI nr	2012-07-23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ppa012179m.g	ppa012179m.g	Prunus persica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ppa012179m.CDS.1	ppa012179m.CDS.1	Prunus persica	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ppa012179m.five_prime_UTR.1	ppa012179m.five_prime_UTR.1	Prunus persica	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ppa012179m	ppa012179m	Prunus persica	polypeptide

Cross References

External references for this mRNA


Database	Accession
"Phytozome_pacid	17662709"

Homology

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01032684001 (assembled CDS)

HSP 1 Score: 130.568 bits (327), Expect = 3.747e-31
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA +CALGLNS+++C  +C+ R   E     A+R   +GLKK  +  +P + Y +  N            C ICL +F  GDK+RVLPKC+H FH+ CID WL+ HSSCPTCRH L
Sbjct:   40 NMVIILAALLCALICALGLNSIVRCALRCSRRLAFETADETAARLAATGLKKSALRQIPVAVYGSGTNIPATD-------CPICLGEFEQGDKVRVLPKCHHGFHMKCIDTWLVSHSSCPTCRHSL 158

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01022306001 (assembled CDS)

HSP 1 Score: 103.99 bits (258), Expect = 3.755e-23
Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQC------ANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRH-----RLKSSGSMPSLAEIVTT 540
            +VILAA+ CA +C +GL ++ +C +        A  + T+P         N GLKK+ + +LP  T+ A ++            CAICL +F +GD+IRVLP+C H FHV C+D WL  HSSCP+CR      R +  G  P+++   T+
Sbjct:   29 VVILAALLCALICVVGLIAVARCAWLRRGSAGGARASATQPAA-------NKGLKKKILQSLPKLTHDATVSGKFAE-------CAICLAEFVEGDEIRVLPQCGHGFHVLCVDTWLSSHSSCPSCRQILVVTRCRQCGKFPAISGTATS 164

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01026703001 (assembled CDS)

HSP 1 Score: 77.7962 bits (190), Expect = 2.882e-15
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  358 CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMP 516
            C++CL +F DG+ +R+LPKCNH FH+ CID WL  HSSCP CR  ++S+  +P
Sbjct:  135 CSVCLSEFEDGENLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRFDIRSAKILP 187

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01009098001 (assembled CDS)

HSP 1 Score: 76.6406 bits (187), Expect = 6.420e-15
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 1

Query:   91 DQLQPPNHLNSM---------VILAAIFCAFVCALGLNSML--QCVFQ-CANRALTEPV------QWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            +Q  PP+ L S+         +++ AI  AF   +G  S+   QC+ +    R  TE V       W+A+R LNS     ++   PT  YSA               CA+CL +F D + +R+LPKCNH FH  CID WL  H +CP CR  L
Sbjct:   33 EQSPPPSELMSLAQKFNPSMAIVMIAIVSAFFF-MGFFSVYLRQCIERRVRGRFNTEIVGIGGHRSWMAARGLNSS----DIERFPTFVYSA---VKAHKIGKEGLECAVCLNEFEDDETLRLLPKCNHVFHSDCIDLWLASHVTCPVCRANL 177

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01016564001 (assembled CDS)

HSP 1 Score: 75.0998 bits (183), Expect = 1.868e-14
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:  358 CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSG 507
            C +CL +F DG+ IR+LPKC H FHV CID WL  HS+CP CR  + SSG
Sbjct:  308 CVVCLCEFKDGEAIRILPKCLHSFHVPCIDMWLCSHSNCPLCRTTVISSG 357

HSP 2 Score: 69.707 bits (169), Expect = 7.848e-13
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1

Query:  358 CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCR 486
            CA+CL +F +G+++R LP+C H FHVACID WL  H++CP CR
Sbjct:   94 CAVCLSEFEEGEELRTLPECMHSFHVACIDMWLYSHTNCPLCR 136

HSP 3 Score: 63.929 bits (154), Expect = 4.307e-11
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1

Query:  358 CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCR 486
            C +CL +F +G+++R LP C H FHV CID WL  H +CP CR
Sbjct:  207 CVVCLSEFEEGEELRTLPHCMHSFHVPCIDMWLNSHMNCPLCR 249

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01000015001 (assembled CDS)

HSP 1 Score: 74.3294 bits (181), Expect = 3.186e-14
Identity = 45/145 (31.03%), Postives = 66/145 (45.52%), Query Frame = 1

Query:   79 DPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVA------SRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            D  +D  Q     +SM I+  I  A +  +G  S+   +  C++      ++  A      SRR   GL +  +   PT  YS                CA+CL +F D + +R++PKC+H FH  CID WL  H +CP CR  L
Sbjct:   77 DTSNDPYQQQRFSSSMAIIIVILVAALFLMGFFSVY--IRHCSDSRNGGSIRAAAGAALGRSRRGTRGLDQAVLETFPTFEYSV---VKGLKIGKGVLECAVCLNEFEDNETLRLIPKCDHVFHPECIDAWLASHVTCPVCRANL 216

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01023776001 (assembled CDS)

HSP 1 Score: 73.1738 bits (178), Expect = 7.099e-14
Identity = 49/139 (35.25%), Postives = 73/139 (52.52%), Query Frame = 1

Query:  106 PNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANR---------ALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            P+ L  ++ILA IF  FV  L L+ +++ + +  NR         AL   +Q +     ++G+ +  +  LP   Y A +             CA+CL +F   DK+R+LPKC+H FH+ CID WLL HS+CP CR  L
Sbjct:   91 PSILLIIIILAIIF--FVSGL-LHLLVRFLLRQPNREPEDLDNVTALQGQLQQLFHLH-DAGVDQSFIDTLPVFLYKAIIGAKNPFD------CAVCLCEFEAEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRGSL 219

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01015336001 (assembled CDS)

HSP 1 Score: 72.4034 bits (176), Expect = 1.211e-13
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1

Query:  358 CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKS 501
            CA+CL  F D + +R+LPKC H FH+ C+D+WL +HSSCP CRH++ +
Sbjct:  162 CAVCLSKFEDIEILRLLPKCKHAFHIDCVDQWLEKHSSCPLCRHKVSA 209

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01005189001 (assembled CDS)

HSP 1 Score: 72.4034 bits (176), Expect = 1.211e-13
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1

Query:  262 GLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            GL  + +  +P  T ++D N            C++CL DF  G+ +R LP C+H FH+ CIDKWLL H SCP CR  L
Sbjct:  161 GLPGDSVEKIPKITITSDNN---GDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLGHGSCPLCRRDL 235

[Close]

BLAST of ppa012179m vs. Vitis vinifera
Match: GSVIVT01028038001 (assembled CDS)

HSP 1 Score: 72.0182 bits (175), Expect = 1.581e-13
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1

Query:  253 LNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMP 516
            ++ GL    + +LPT  YS   +            CA+CL +F D +K RVLPKCNH FH  CID W   HS+CP CR  L  SG+ P
Sbjct:   81 VDQGLDVSILKSLPTFVYSKATHGPILE-------CAVCLSEFEDDEKGRVLPKCNHCFHNDCIDMWFHSHSNCPLCR-ALTISGASP 160

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: B9MUM8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1109660 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.308e-51
Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N MVI+AA+ CA VCALGLNSMLQCVFQC  RA+TEP +W++SRR NSGLKK+EMVALPTSTY+               GCAICL DF+DGDKIRVLPKCNH FH  CIDKWLL HSSCPTCRHRLKS+ S+PSL +IVT
Sbjct:    4 NVMVIVAAMICALVCALGLNSMLQCVFQCTRRAVTEPAEWISSRRRNSGLKKKEMVALPTSTYAHQ------GSPSSASGCAICLADFTDGDKIRVLPKCNHRFHADCIDKWLLSHSSCPTCRHRLKSNESVPSLEQIVT 137

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: B9GY22_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_757005 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.446e-50
Identity = 103/152 (67.76%), Postives = 112/152 (73.68%), Query Frame = 1

Query:   88 HDQLQPPN-HLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKS-SGSMPSLAEIVT 537
            HDQ Q P    N MVI+AA+ CAFVCALGLNSMLQCVFQC  R +TE   W++SRR NSGLKK EMV LPTSTY+               GCAICL DF+DGDKIRVLPKCNH FHV CIDKWLL HSSCPTCRHRLKS   S+PSL +IVT
Sbjct:   20 HDQSQEPTMDFNVMVIVAAMLCAFVCALGLNSMLQCVFQCTQRTVTETAGWISSRRQNSGLKKREMVGLPTSTYA------HQGSPSSTSGCAICLADFTDGDKIRVLPKCNHEFHVDCIDKWLLSHSSCPTCRHRLKSIDESVPSLEQIVT 165

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: I1MGU9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.088e-49
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 1

Query:  103 PPNH-LNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            PP H +N MV+LA I CAF+CALGLN+MLQCVFQCANR LTEP+QW+ASRRLNSGLKK EMVALPTSTY+   ++           CAICL +FSDGD+IR LP CNH FHV CIDKWLL HSSCPTCR+ LK + S+ SL  +V+
Sbjct:   27 PPEHSINLMVVLAVIVCAFLCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKKREMVALPTSTYT---HSCASPSSPSNNICAICLTEFSDGDRIRFLPNCNHRFHVDCIDKWLLSHSSCPTCRNLLKPTDSVHSLHTVVS 169

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: A5ATC5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025310 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.727e-49
Identity = 95/140 (67.86%), Postives = 108/140 (77.14%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N +VI+AA+ C  VCALGLNS LQCV +C   ALTEPVQW ASRRLNSGLKK++MVALPTSTYS               GC ICL DFSDG+KIRVLPKCNHWFHV CIDKWLL HSSCPTCR++LKS+ S+PSL  ++T
Sbjct:   29 NLVVIVAAMVCFLVCALGLNSTLQCVVRCTRLALTEPVQWAASRRLNSGLKKKDMVALPTSTYSNS------GSPSRSSGCVICLADFSDGEKIRVLPKCNHWFHVLCIDKWLLSHSSCPTCRNQLKSNDSLPSLETLIT 162

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: B9T5A0_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0060980 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.700e-47
Identity = 97/158 (61.39%), Postives = 108/158 (68.35%), Query Frame = 1

Query:   70 CDQDPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTY--SADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            C Q P  +      + N MVI+ A+ CA VCALGLNSMLQC  QC +R +T PV+WVASRR NSGLKK+EMVALPTSTY  S    +           CAICL DFSDG+KIRVLP+CNH FHV CIDKWLL H SCPTCR RLK S S  SL  IVT
Sbjct:   20 CHQ-PQGEPFTTTLNFNVMVIVGAMLCALVCALGLNSMLQCAIQCTHRVITGPVEWVASRRQNSGLKKKEMVALPTSTYVNSTSSPSASASSSASASSCAICLADFSDGEKIRVLPQCNHRFHVGCIDKWLLSHPSCPTCRRRLKCSDSRTSLDHIVT 176

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: I1KRJ9_SOYBN (Uncharacterized protein OS=Glycine max GN=Gma.27049 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.287e-46
Identity = 89/126 (70.63%), Postives = 99/126 (78.57%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLN-TXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLK 498
            +V++AAI CAFVCALGLN+MLQCVFQCA R LTEP QW+ASRRLNSGLKK+EMVALPTSTY+   +             C ICL +FSDGD IR LPKCNH+FHV CIDKWLL HSSCPTCRH LK
Sbjct:   30 IVLVAAILCAFVCALGLNTMLQCVFQCACRVLTEPRQWIASRRLNSGLKKKEMVALPTSTYTTTHSAAASSSSSPNSSSCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLK 155

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: G7INF2_MEDTR (RING-H2 finger protein ATL2A OS=Medicago truncatula GN=MTR_2g035800 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.322e-45
Identity = 86/141 (60.99%), Postives = 107/141 (75.89%), Query Frame = 1

Query:  115 LNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            LNSMV++AAI CA +CALGLN+MLQCVFQCANR LTEP+QW+A+RR NSGLKK+EMVALPTS Y+                CAICL +F DGD +++LPKCNH FHV CID+WLL HS CPTCR  +KS+ S+  L+ +++
Sbjct:   62 LNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIATRRRNSGLKKKEMVALPTSIYNT------HSPPSLDSNCAICLAEFCDGDNMKLLPKCNHRFHVVCIDEWLLAHSFCPTCRKMIKSNDSVHCLSIVIS 196

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: I1K379_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.602e-41
Identity = 85/126 (67.46%), Postives = 94/126 (74.60%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXG-CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLK 498
            MV+LAAI CAFVCALGLN+MLQC    A R  TEP QW+ASRRLNSGLK++EMVALPTSTY+   +             C ICL +FSDGD IR LPKCNH+FHV CIDKWLL HSSCPTCRH LK
Sbjct:    1 MVLLAAILCAFVCALGLNTMLQC----ACRVFTEPRQWIASRRLNSGLKRKEMVALPTSTYTTHSSAASSPSSSPNSSTCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLK 122

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: E5GCL9_CUCME (Ring zinc finger OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.570e-41
Identity = 83/145 (57.24%), Postives = 104/145 (71.72%), Query Frame = 1

Query:   79 DPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSM 513
            DP   +L    + N +VI+ AI CA VC LGLN+ML C+ QCAN +L + VQWVA R LNSG+KK+++VALPTSTY+ +  +           CAICL+DFS+GD IRVLP C H +HV+CIDKWLL HSSCPTCRH+LKS  S+
Sbjct:    2 DPREHELG--GNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYT-NSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI 143

[Close]

BLAST of ppa012179m vs. ExPASy TrEMBL
Match: C5Z7N1_SORBI (Putative uncharacterized protein Sb10g026650 OS=Sorghum bicolor GN=Sb10g026650 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.959e-39
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 1

Query:  103 PPNHLNS--MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSM 513
            PP+ L+   +VILAA+ CA VCALGLNSMLQCV +C  RA+++P  WVA RR N+GLK+EE+VALP +TY A              GCAICL DF+DG++IRVLP C H FHV CID+WL+ H SCPTCR RL S  ++
Sbjct:   21 PPSPLDYDVVVILAAMLCALVCALGLNSMLQCVVRCTRRAVSDPAAWVAHRRANAGLKREEVVALPVATYVAS---------PAPAGCAICLSDFADGERIRVLPVCGHRFHVVCIDRWLVSHCSCPTCRRRLSSDSAV 150

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.197e-28
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            ++ILAA+ CA +CALG+NS+L+CV +C  R          +  +  G+KK  +  +P  +YS +L             C ICL DF +G+ +RVLPKCNH FHV CID WLL HSSCPTCR  L
Sbjct:   42 VIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATE-------CLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.709e-25
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA + ALGLNS+L+C  +C     +       + R  +GLKK E+   P + Y +               CAICL +F+DG+++RVLP CNH FH++CID WL+ HSSCP CRH L
Sbjct:   33 NMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR--AGLKKRELKKFPVAEYGSG------EVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.808e-25
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEP-VQWVASRRLN-------SGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA +CAL LNS L+CV +   R  ++  V   ++   N       +GLKK+ +  +P   Y + +             C ICL DF DG+K+RVLPKCNH FHV CID WLL  SSCPTCR  L
Sbjct:   32 NMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.483e-25
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTE------PVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + CA VC+LGLNS+++C  +C+N   +E      PV     R  N+G+K++ + +  T +YS +LN            CAICL +F   +++++LP C+H FHV CIDKWL  HSSCPTCRH L
Sbjct:   55 NVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPV-----RLTNTGVKRKALKSFQTVSYSTELNLPGLDTE-----CAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.890e-24
Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANR-ALTEPVQWVASRRL--NSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + C  +C LGL+ +++C F+ ++R  ++EP+  +++ R   N G+KK+ +   P  +YS ++N            C ICL DF  G+++R+LPKCNH FHV CIDKWL  H +CP CRH L
Sbjct:   57 NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEE-----CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.225e-23
Identity = 50/130 (38.46%), Postives = 81/130 (62.31%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVF-QCANRALTEPVQWVASRR---LNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + C  +C+LGL+ +++C F +  +  +++P+   ++ R   +N G+KK+ +  LP   YS ++N            C ICL DF  G+++RVLPKCNH FH+ CIDKWL +H +CP CRH L
Sbjct:   51 NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEINLPGVGEE-----CVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.225e-23
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANR-ALTEPVQWVASRR--LNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N M++L+ + C  +C LGL+ +++C  + + R  ++EPV  ++S R   N G+KK+ +   P  +YS ++N            C ICL DF  G+++R+LPKCNH FHV CIDKWL +H +CP CR+ L
Sbjct:   57 NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE-----CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL45_ARATH (RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.037e-22
Identity = 58/135 (42.96%), Postives = 78/135 (57.78%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALT--EPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXG---------CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            +VIL+A+ CA VC  GL ++ +C +    R LT   P     +   N GLKK+ + ALP STY+A  +T                    CAIC+ +FS+G++IR+LP C+H FHVACIDKWL   SSCP+CR  L
Sbjct:   27 VVILSALLCALVCVAGLAAVARCAWL---RRLTGVNPAAVGEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRIL 158

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.310e-22
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 1

Query:   94 QLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVF--QCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            +  PP + + ++ILA + CA  C +GL ++ +C +  + A+R  ++          N GLKK+ + +LP  TYS D              CAICL +F+ GD++RVLP+C H FHV+CID WL  HSSCP+CR  L
Sbjct:   19 EASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPD-----SPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149

[Close]

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Match: ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.310e-22
Identity = 62/138 (44.93%), Postives = 82/138 (59.42%), Query Frame = 1

Query:  115 LNS--MVILAAIFCAFVCALGLNSMLQCVF----QCANRALT-----EPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            LNS  +VILAA+ CA +C LGL ++ +CV+       NR ++      P   VA+   N GLKK+ + +LP  T+S +              CAICL +FS GD++RVLP+C H FHVACID WL  HSSCP+CR  L
Sbjct:   26 LNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAA--NKGLKKKVLQSLPKLTFSPE-----SPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT5G05280.1 (| Symbols: | RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176)

HSP 1 Score: 123.25 bits (308), Expect = 8.530e-29
Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            ++ILAA+ CA +CALG+NS+L+CV +C  R          +  +  G+KK  +  +P  +YS +L             C ICL DF +G+ +RVLPKCNH FHV CID WLL HSSCPTCR  L
Sbjct:   42 VIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATE-------CLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT5G01880.1 (| Symbols: | RING/U-box superfamily protein | chr5:339017-339496 FORWARD LENGTH=159)

HSP 1 Score: 115.546 bits (288), Expect = 1.779e-26
Identity = 55/126 (43.65%), Postives = 76/126 (60.32%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA + ALGLNS+L+C  +C     +       + R  +GLKK E+   P + Y +               CAICL +F+DG+++RVLP CNH FH++CID WL+ HSSCP CRH L
Sbjct:   33 NMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR--AGLKKRELKKFPVAEYGSG------EVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSL 150

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT3G10910.1 (| Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181)

HSP 1 Score: 114.39 bits (285), Expect = 3.962e-26
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEP-VQWVASRRLN-------SGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA +CAL LNS L+CV +   R  ++  V   ++   N       +GLKK+ +  +P   Y + +             C ICL DF DG+K+RVLPKCNH FHV CID WLL  SSCPTCR  L
Sbjct:   32 NMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT1G49230.1 (| Symbols: | RING/U-box superfamily protein | chr1:18209320-18209979 FORWARD LENGTH=219)

HSP 1 Score: 113.235 bits (282), Expect = 8.827e-26
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTE------PVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + CA VC+LGLNS+++C  +C+N   +E      PV     R  N+G+K++ + +  T +YS +LN            CAICL +F   +++++LP C+H FHV CIDKWL  HSSCPTCRH L
Sbjct:   55 NVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPV-----RLTNTGVKRKALKSFQTVSYSTELNLPGLDTE-----CAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT1G49210.1 (| Symbols: | RING/U-box superfamily protein | chr1:18201994-18202671 FORWARD LENGTH=225)

HSP 1 Score: 112.079 bits (279), Expect = 1.966e-25
Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANR-ALTEPVQWVASRRL--NSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + C  +C LGL+ +++C F+ ++R  ++EP+  +++ R   N G+KK+ +   P  +YS ++N            C ICL DF  G+++R+LPKCNH FHV CIDKWL  H +CP CRH L
Sbjct:   57 NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYSREMNLPGIGEE-----CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT3G18773.1 (| Symbols: | RING/U-box superfamily protein | chr3:6466304-6466966 FORWARD LENGTH=220)

HSP 1 Score: 109.383 bits (272), Expect = 1.275e-24
Identity = 50/130 (38.46%), Postives = 81/130 (62.31%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVF-QCANRALTEPVQWVASRR---LNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + C  +C+LGL+ +++C F +  +  +++P+   ++ R   +N G+KK+ +  LP   YS ++N            C ICL DF  G+++RVLPKCNH FH+ CIDKWL +H +CP CRH L
Sbjct:   51 NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEINLPGVGEE-----CVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT1G49220.1 (| Symbols: | RING/U-box superfamily protein | chr1:18205946-18206701 FORWARD LENGTH=251)

HSP 1 Score: 109.383 bits (272), Expect = 1.275e-24
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANR-ALTEPVQWVASRR--LNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N M++L+ + C  +C LGL+ +++C  + + R  ++EPV  ++S R   N G+KK+ +   P  +YS ++N            C ICL DF  G+++R+LPKCNH FHV CIDKWL +H +CP CR+ L
Sbjct:   57 NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEE-----CVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT4G35480.1 (| Symbols: RHA3B | RING-H2 finger A3B | chr4:16852233-16852835 REVERSE LENGTH=200)

HSP 1 Score: 106.301 bits (264), Expect = 1.079e-23
Identity = 58/135 (42.96%), Postives = 78/135 (57.78%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALT--EPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXG---------CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            +VIL+A+ CA VC  GL ++ +C +    R LT   P     +   N GLKK+ + ALP STY+A  +T                    CAIC+ +FS+G++IR+LP C+H FHVACIDKWL   SSCP+CR  L
Sbjct:   27 VVILSALLCALVCVAGLAAVARCAWL---RRLTGVNPAAVGEAPPPNKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRIL 158

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT1G76410.1 (| Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185)

HSP 1 Score: 105.145 bits (261), Expect = 2.404e-23
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 1

Query:   94 QLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVF--QCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            +  PP + + ++ILA + CA  C +GL ++ +C +  + A+R  ++          N GLKK+ + +LP  TYS D              CAICL +F+ GD++RVLP+C H FHV+CID WL  HSSCP+CR  L
Sbjct:   19 EASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPD-----SPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQIL 149

[Close]

BLAST of ppa012179m vs. TAIR10
Match: AT1G20823.1 (| Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197)

HSP 1 Score: 105.145 bits (261), Expect = 2.404e-23
Identity = 62/138 (44.93%), Postives = 82/138 (59.42%), Query Frame = 1

Query:  115 LNS--MVILAAIFCAFVCALGLNSMLQCVF----QCANRALT-----EPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            LNS  +VILAA+ CA +C LGL ++ +CV+       NR ++      P   VA+   N GLKK+ + +LP  T+S +              CAICL +FS GD++RVLP+C H FHVACID WL  HSSCP+CR  L
Sbjct:   26 LNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSPQPPVAAA--NKGLKKKVLQSLPKLTFSPE-----SPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0001s15930.1 ()

HSP 1 Score: 211.075 bits (536), Expect = 3.525e-55
Identity = 104/153 (67.97%), Postives = 116/153 (75.82%), Query Frame = 1

Query:   82 PHHDQLQPPN-HLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            P  DQ Q P    N MVI+AA+ CA VCALGLNSMLQCVFQC  RA+TEP +W++SRR NSGLKK+EMVALPTSTY+               GCAICL DF+DGDKIRVLPKCNH FH  CIDKWLL HSSCPTCRHRLKS+ S+PSL +IVT
Sbjct:   18 PCQDQSQEPTMDFNVMVIVAAMICALVCALGLNSMLQCVFQCTRRAVTEPAEWISSRRRNSGLKKKEMVALPTSTYAHQ------GSPSSASGCAICLADFTDGDKIRVLPKCNHRFHADCIDKWLLSHSSCPTCRHRLKSNESVPSLEQIVT 164

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0003s07270.1 ()

HSP 1 Score: 203.371 bits (516), Expect = 7.350e-53
Identity = 103/152 (67.76%), Postives = 112/152 (73.68%), Query Frame = 1

Query:   88 HDQLQPPN-HLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKS-SGSMPSLAEIVT 537
            HDQ Q P    N MVI+AA+ CAFVCALGLNSMLQCVFQC  R +TE   W++SRR NSGLKK EMV LPTSTY+               GCAICL DF+DGDKIRVLPKCNH FHV CIDKWLL HSSCPTCRHRLKS   S+PSL +IVT
Sbjct:   20 HDQSQEPTMDFNVMVIVAAMLCAFVCALGLNSMLQCVFQCTQRTVTETAGWISSRRQNSGLKKREMVGLPTSTYA------HQGSPSSTSGCAICLADFTDGDKIRVLPKCNHEFHVDCIDKWLLSHSSCPTCRHRLKSIDESVPSLEQIVT 165

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0013s09370.1 ()

HSP 1 Score: 130.568 bits (327), Expect = 6.055e-31
Identity = 61/126 (48.41%), Postives = 78/126 (61.90%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA +CALGLNS+++C  +C+ R   E     A+R   +GLKK  +  +P   Y                 CAICL +F DG+K+RVLPKCNH FHV CID WL+ HSSCPTCRH L
Sbjct:   41 NMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPDQTAARLAATGLKKSALRQIPVIIYGVS------GIHTIATDCAICLGEFIDGEKVRVLPKCNHGFHVRCIDTWLVSHSSCPTCRHSL 160

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0016s14320.1 ()

HSP 1 Score: 129.798 bits (325), Expect = 1.033e-30
Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N ++ILAA+ CA + ALGLNS+++C+ +C++R   E  +  A+R   +GLKK ++  +P + Y A  +            C ICL +F DG+K+RVLPKCNH FHV CID WLL HSSCP CRH L    +    A+ VT
Sbjct:   37 NMVIILAALLCALIGALGLNSIVRCLLRCSSRFALETTEEAAARLAATGLKKRDLRQIPVAIYGAGGSISATE-------CPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLEHTTDSGAAQEVT 169

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0001s31710.1 ()

HSP 1 Score: 127.102 bits (318), Expect = 6.695e-30
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + CA +C+LGLNS+++C  +C+N   +E     +++  N+G+K++ +   P   YS DLN            C ICL +F+ G+ +R+LPKCNH FHV CIDKWL  HSSCPTCRH L
Sbjct:   61 NVVMVLSVLLCALICSLGLNSIIRCALRCSNLVASESAANPSTQAANTGVKRKALKTFPIVKYSTDLNLPGLDTQ-----CVICLSEFTPGEHVRLLPKCNHGFHVKCIDKWLSSHSSCPTCRHCL 181

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0019s02620.1 ()

HSP 1 Score: 126.716 bits (317), Expect = 8.744e-30
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N +++L+ + CA +C+LGLNS+++C  +C+N A +E     +++  N+G+ +  + + P   YS+DLN            C ICL +F+ G+++R+LPKC+H FHV CIDKWL  HSSCPTCRH L
Sbjct:   60 NVVMVLSVLLCALICSLGLNSIIRCALRCSNIAASESAANPSTQSANTGVNRRALKSFPVVNYSSDLNLPGLDTE-----CVICLSEFTPGERVRLLPKCHHGFHVKCIDKWLSSHSSCPTCRHCL 180

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0019s15050.1 ()

HSP 1 Score: 122.094 bits (305), Expect = 2.154e-28
Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 1

Query:   97 LQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASR---RLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            L    + N +++LAA+  AF+CALG+ S+ +C  +C  R   E  Q  ASR     N+GL K  +  +P  TY   LN            C ICL +FS+G+K+RVLPKC+H FHV CIDKWLL HSSCP CR  L
Sbjct:   18 LNSDENSNMVIVLAALLFAFLCALGIKSIARCAIRCGYRIGFETPQQAASRLAAATNTGLMKSALGQIPVVTYEPGLNIQVTD-------CTICLGEFSEGEKVRVLPKCSHGFHVKCIDKWLLLHSSCPLCRQTL 146

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0019s08600.1 ()

HSP 1 Score: 121.709 bits (304), Expect = 2.813e-28
Identity = 59/138 (42.75%), Postives = 77/138 (55.80%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEI 531
            N ++ILAA+ CA +CALGLNS+++C  +C+ R   E     A+    +GLKK  +  +P   Y                 CAICL +F  G+K+RVLP CNH FHV CID WL+ HSSCPTCR  L    +     EI
Sbjct:   41 NMVIILAALLCALICALGLNSIVRCAIRCSRRFTFETRDQTAAHMAATGLKKSALRRIPVIIYGV------AGIHLIATDCAICLGEFIGGEKVRVLPNCNHGFHVRCIDTWLVSHSSCPTCRQSLLEQPASSDATEI 172

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0002s00780.1 ()

HSP 1 Score: 115.546 bits (288), Expect = 2.016e-26
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVF--QCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRH-----RLKSSGSMPS 519
            MVILAA+ CA +C LGL ++ +C +  + ++R  T PV        N GLKK+ + +LP  T+S D +            CAICL +FS GD+IRVLP+C H FHV+CID WL  HSSCP+CR      R +  G +PS
Sbjct:   34 MVILAALLCALICVLGLIAVARCAWLRRFSSRNPTPPVPPPPPSVANKGLKKKVLRSLPKQTFSEDFS-------GKLPDCAICLTEFSAGDEIRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVARCQKCGGLPS 165

[Close]

BLAST of ppa012179m vs. Populus trichicarpa v2.0
Match: POPTR_0005s27660.1 ()

HSP 1 Score: 114.775 bits (286), Expect = 3.438e-26
Identity = 64/149 (42.95%), Postives = 85/149 (57.05%), Query Frame = 1

Query:  100 QPPNHLNS--MVILAAIFCAFVCALGLNSMLQCVF--QCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRH-----RLKSSGSMPS 519
            QPP  ++   MVILAA+ CA +C LGL ++ +C +  + ++     PV        N GLKK+ + +LP  T+S D              CAICL +FS GD+IRVLP+C H FHVACID WL  HSSCP+CR      R +  G +PS
Sbjct:   24 QPPATVDPDFMVILAALLCALICVLGLIAVARCAWLRRLSSHTPAPPVPLPPPSVANKGLKKKTLRSLPKQTFSED-------SAGKFSDCAICLTEFSVGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILMVDRCQKCGGLPS 165

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000126653 (MDP0000126653)

HSP 1 Score: 265.774 bits (678), Expect = 1.612e-71
Identity = 131/160 (81.88%), Postives = 136/160 (85.00%), Query Frame = 1

Query:   61 RTLCDQDPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVTT 540
            RTLCDQDP+HDQ QP +HLN MVILAAIFCAFVCALGLNSML CVFQC NR LTEPVQWVASRRLNSGLKK+EMVALPTSTY AD  T          GCAICL DF DGDK+RVLPKCNH FHVACIDKWLL HSSCPTCRHRLKSS SMPSL+EIVTT
Sbjct:   16 RTLCDQDPNHDQFQPTHHLNFMVILAAIFCAFVCALGLNSMLHCVFQCTNRTLTEPVQWVASRRLNSGLKKKEMVALPTSTY-ADSGT--TSPSSSSSGCAICLADFCDGDKLRVLPKCNHRFHVACIDKWLLCHSSCPTCRHRLKSSDSMPSLSEIVTT 172

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000166108 (MDP0000166108)

HSP 1 Score: 265.774 bits (678), Expect = 1.612e-71
Identity = 131/160 (81.88%), Postives = 136/160 (85.00%), Query Frame = 1

Query:   61 RTLCDQDPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVTT 540
            RTLCDQDP+HDQ QP +HLN MVILAAIFCAFVCALGLNSML CVFQC NR LTEPVQWVASRRLNSGLKK+EMVALPTSTY AD  T          GCAICL DF DGDK+RVLPKCNH FHVACIDKWLL HSSCPTCRHRLKSS SMPSL+EIVTT
Sbjct:   16 RTLCDQDPNHDQFQPTHHLNFMVILAAIFCAFVCALGLNSMLHCVFQCTNRTLTEPVQWVASRRLNSGLKKKEMVALPTSTY-ADSGT--TSPSSSSSGCAICLADFCDGDKLRVLPKCNHRFHVACIDKWLLCHSSCPTCRHRLKSSDSMPSLSEIVTT 172

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000803911 (MDP0000803911)

HSP 1 Score: 250.751 bits (639), Expect = 5.365e-67
Identity = 123/159 (77.36%), Postives = 133/159 (83.65%), Query Frame = 1

Query:   61 RTLCDQDPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            RTLCDQ+P+HDQ QP +HLN MVILAAI CA VC LG+NSML CVFQCA+RA+ EPV+WVASRRLNSGLKK+EMVALPTSTY AD  T          GCAICL DFSDGDK+RVLPKCNH FHVACIDKWLL HSSCPTCRHRLKSS  MPSL+EIVT
Sbjct:   22 RTLCDQNPNHDQFQPIHHLNFMVILAAILCALVCVLGINSMLHCVFQCASRAVIEPVEWVASRRLNSGLKKKEMVALPTSTY-ADSGT--TSPSSSSSGCAICLADFSDGDKLRVLPKCNHRFHVACIDKWLLCHSSCPTCRHRLKSSDCMPSLSEIVT 177

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000486156 (MDP0000486156)

HSP 1 Score: 138.272 bits (347), Expect = 3.881e-33
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGS 510
            N ++ILAA+ CA +CALGLNS+++C  +C++R + E  +  A+R   +GLKK  +  +P + Y + +N            C ICL +F DG+K+RVLPKCNH FHV CID W L HSSCP CRH L S+ S
Sbjct:   35 NMVIILAALLCALICALGLNSIVRCALRCSHRFVLETPEQAAARLAATGLKKSHLRQIPIAVYGSGVNIPATE-------CPICLTEFEDGEKVRVLPKCNHGFHVRCIDTWFLSHSSCPNCRHSLLSTSS 158

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000220790 (MDP0000220790)

HSP 1 Score: 138.272 bits (347), Expect = 3.881e-33
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGS 510
            N ++ILAA+ CA +CALGLNS+++C  +C++R + E  +  A+R   +GLKK  +  +P + Y + +N            C ICL +F DG+K+RVLPKCNH FHV CID W L HSSCP CRH L S+ S
Sbjct:  107 NMVIILAALLCALICALGLNSIVRCALRCSHRFVLETPEQAAARLAATGLKKSHLRQIPIAVYGSGVNIPATE-------CPICLTEFEDGEKVRVLPKCNHGFHVRCIDTWFLSHSSCPNCRHSLLSTSS 230

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000231890 (MDP0000231890)

HSP 1 Score: 135.961 bits (341), Expect = 1.926e-32
Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIV 534
            N ++ILAA+ CA +CALGLNS ++C  +C++R   E  +  A++   +GLKK  +  +P + Y + +N            C ICL +F DG+K+RVLPKC+H FHV CID WLL HSSCP CRH L S+ S    A  V
Sbjct:   35 NMVIILAALLCALICALGLNSFVRCALRCSHRFALETPEQAAAQLAATGLKKRHLRQIPIAVYGSGVNIPATE-------CPICLAEFEDGEKVRVLPKCHHGFHVRCIDTWLLSHSSCPNCRHSLLSTSSAAPAAAAV 166

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000131315 (MDP0000131315)

HSP 1 Score: 135.961 bits (341), Expect = 1.926e-32
Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIV 534
            N ++ILAA+ CA +CALGLNS ++C  +C++R   E  +  A++   +GLKK  +  +P + Y + +N            C ICL +F DG+K+RVLPKC+H FHV CID WLL HSSCP CRH L S+ S    A  V
Sbjct:   35 NMVIILAALLCALICALGLNSFVRCALRCSHRFALETPEQAAAQLAATGLKKRHLRQIPIAVYGSGVNIPATE-------CPICLAEFEDGEKVRVLPKCHHGFHVRCIDTWLLSHSSCPNCRHSLLSTSSAAPAAAAV 166

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000247371 (MDP0000247371)

HSP 1 Score: 123.25 bits (308), Expect = 1.292e-28
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA + ALGLNS+++C  +C+ R   E     A+R   +GLKK  +  +P   Y   LN            C ICL +F DG K+R+LPKCNH FH  CID W L HSSCPTCRH L
Sbjct:   56 NMVIILAALLCALIFALGLNSIVRCALRCSRRFSPETPDETAARLAVTGLKKSILRRIPIVIYGTGLNIAATD-------CPICLGEFMDGQKVRLLPKCNHGFHARCIDTWFLSHSSCPTCRHSL 174

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000252590 (MDP0000252590)

HSP 1 Score: 120.939 bits (302), Expect = 6.412e-28
Identity = 56/126 (44.44%), Postives = 76/126 (60.32%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            N ++ILAA+ CA + ALGLNS+++C  +C+ R  +E     A+R   +GL+K  +  +P   Y    N            C ICL +F+DG K+R+LPKC+H FHV CID W L HSSCP CRH L
Sbjct:   56 NMVIILAALLCALIFALGLNSIVRCALRCSRRFSSETPDQTAARLAATGLRKRTLRQIPVVVYGTGQNIPSTD-------CPICLGEFTDGQKVRLLPKCSHGFHVRCIDTWFLSHSSCPICRHSL 174

[Close]

BLAST of ppa012179m vs. GDR
Match: MDP0000853517 (MDP0000853517)

HSP 1 Score: 117.857 bits (294), Expect = 5.428e-27
Identity = 57/146 (39.04%), Postives = 85/146 (58.22%), Query Frame = 1

Query:   82 PHHDQLQPPNHL--NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWV------ASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRL 495
            P  DQ    N    N +++L+ + CA +C+LGLN +++C  +C++   +   +        ++R  N+G+KK+ +   PT  YS +L             CAICL +F+ G+++R+LPKCNH FHV CIDKWL  HSSCP CRH L
Sbjct:   49 PSTDQYPGDNSFDANVVMVLSVLLCALICSLGLNFIIKCALRCSSFVSSSESRSAGNNNATSARLANTGVKKKALKTFPTVNYSVELKLPGLDTE-----CAICLSEFTAGERVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHNL 189

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|224138564|ref|XP_002326634.1| (predicted protein [Populus trichocarpa] >gi|222833956|gb|EEE72433.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 206.838 bits (525), Expect = 1.186e-51
Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N MVI+AA+ CA VCALGLNSMLQCVFQC  RA+TEP +W++SRR NSGLKK+EMVALPTSTY+               GCAICL DF+DGDKIRVLPKCNH FH  CIDKWLL HSSCPTCRHRLKS+ S+PSL +IVT
Sbjct:    4 NVMVIVAAMICALVCALGLNSMLQCVFQCTRRAVTEPAEWISSRRRNSGLKKKEMVALPTSTYAHQ------GSPSSASGCAICLADFTDGDKIRVLPKCNHRFHADCIDKWLLSHSSCPTCRHRLKSNESVPSLEQIVT 137

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|224074133|ref|XP_002304266.1| (predicted protein [Populus trichocarpa] >gi|222841698|gb|EEE79245.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 203.371 bits (516), Expect = 1.311e-50
Identity = 103/152 (67.76%), Postives = 112/152 (73.68%), Query Frame = 1

Query:   88 HDQLQPPN-HLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKS-SGSMPSLAEIVT 537
            HDQ Q P    N MVI+AA+ CAFVCALGLNSMLQCVFQC  R +TE   W++SRR NSGLKK EMV LPTSTY+               GCAICL DF+DGDKIRVLPKCNH FHV CIDKWLL HSSCPTCRHRLKS   S+PSL +IVT
Sbjct:   20 HDQSQEPTMDFNVMVIVAAMLCAFVCALGLNSMLQCVFQCTQRTVTETAGWISSRRQNSGLKKREMVGLPTSTYA------HQGSPSSTSGCAICLADFTDGDKIRVLPKCNHEFHVDCIDKWLLSHSSCPTCRHRLKSIDESVPSLEQIVT 165

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|356558238|ref|XP_003547414.1| (PREDICTED: RING-H2 finger protein ATL73-like [Glycine max])

HSP 1 Score: 199.519 bits (506), Expect = 1.893e-49
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 1

Query:  103 PPNH-LNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            PP H +N MV+LA I CAF+CALGLN+MLQCVFQCANR LTEP+QW+ASRRLNSGLKK EMVALPTSTY+   ++           CAICL +FSDGD+IR LP CNH FHV CIDKWLL HSSCPTCR+ LK + S+ SL  +V+
Sbjct:   27 PPEHSINLMVVLAVIVCAFLCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKKREMVALPTSTYT---HSCASPSSPSNNICAICLTEFSDGDRIRFLPNCNHRFHVDCIDKWLLSHSSCPTCRNLLKPTDSVHSLHTVVS 169

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|359472767|ref|XP_002275910.2| (PREDICTED: RING-H2 finger protein ATL73 [Vitis vinifera])

HSP 1 Score: 199.134 bits (505), Expect = 2.472e-49
Identity = 95/140 (67.86%), Postives = 108/140 (77.14%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N +VI+AA+ C  VCALGLNS LQCV +C   ALTEPVQW ASRRLNSGLKK++MVALPTSTYS               GC ICL DFSDG+KIRVLPKCNHWFHV CIDKWLL HSSCPTCR++LKS+ S+PSL  ++T
Sbjct:   29 NLVVIVAAMVCFLVCALGLNSTLQCVVRCTRLALTEPVQWAASRRLNSGLKKKDMVALPTSTYSNS------GSPSRSSGCVICLADFSDGEKIRVLPKCNHWFHVLCIDKWLLAHSSCPTCRNQLKSNDSLPSLETLIT 162

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|147818109|emb|CAN67111.1| (hypothetical protein VITISV_025310 [Vitis vinifera])

HSP 1 Score: 199.134 bits (505), Expect = 2.472e-49
Identity = 95/140 (67.86%), Postives = 108/140 (77.14%), Query Frame = 1

Query:  118 NSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            N +VI+AA+ C  VCALGLNS LQCV +C   ALTEPVQW ASRRLNSGLKK++MVALPTSTYS               GC ICL DFSDG+KIRVLPKCNHWFHV CIDKWLL HSSCPTCR++LKS+ S+PSL  ++T
Sbjct:   29 NLVVIVAAMVCFLVCALGLNSTLQCVVRCTRLALTEPVQWAASRRLNSGLKKKDMVALPTSTYSNS------GSPSRSSGCVICLADFSDGEKIRVLPKCNHWFHVLCIDKWLLSHSSCPTCRNQLKSNDSLPSLETLIT 162

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|356528138|ref|XP_003532662.1| (PREDICTED: RING-H2 finger protein ATL73-like [Glycine max])

HSP 1 Score: 194.512 bits (493), Expect = 6.089e-48
Identity = 93/138 (67.39%), Postives = 107/138 (77.54%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLN-TXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIV 534
            +V++AAI CAFVCALGLN+MLQCVFQCA R LTEP QW+ASRRLNSGLKK+EMVALPTSTY+   +             C ICL +FSDGD IR LPKCNH+FHV CIDKWLL HSSCPTCRH LKS+ S+ SL  ++
Sbjct:   30 IVLVAAILCAFVCALGLNTMLQCVFQCACRVLTEPRQWIASRRLNSGLKKKEMVALPTSTYTTTHSAAASSSSSPNSSSCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSNDSLHSLHIVI 167

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|255585451|ref|XP_002533419.1| (ring finger protein, putative [Ricinus communis] >gi|223526732|gb|EEF28962.1| ring finger protein, putative [Ricinus communis])

HSP 1 Score: 190.66 bits (483), Expect = 8.793e-47
Identity = 97/158 (61.39%), Postives = 108/158 (68.35%), Query Frame = 1

Query:   70 CDQDPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTY--SADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            C Q P  +      + N MVI+ A+ CA VCALGLNSMLQC  QC +R +T PV+WVASRR NSGLKK+EMVALPTSTY  S    +           CAICL DFSDG+KIRVLP+CNH FHV CIDKWLL H SCPTCR RLK S S  SL  IVT
Sbjct:   20 CHQ-PQGEPFTTTLNFNVMVIVGAMLCALVCALGLNSMLQCAIQCTHRVITGPVEWVASRRQNSGLKKKEMVALPTSTYVNSTSSPSASASSSASASSCAICLADFSDGEKIRVLPQCNHRFHVGCIDKWLLSHPSCPTCRRRLKCSDSRTSLDHIVT 176

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|357449215|ref|XP_003594884.1| (RING-H2 finger protein ATL2A [Medicago truncatula] >gi|355483932|gb|AES65135.1| RING-H2 finger protein ATL2A [Medicago truncatula])

HSP 1 Score: 184.882 bits (468), Expect = 4.825e-45
Identity = 86/141 (60.99%), Postives = 107/141 (75.89%), Query Frame = 1

Query:  115 LNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSLAEIVT 537
            LNSMV++AAI CA +CALGLN+MLQCVFQCANR LTEP+QW+A+RR NSGLKK+EMVALPTS Y+                CAICL +F DGD +++LPKCNH FHV CID+WLL HS CPTCR  +KS+ S+  L+ +++
Sbjct:   62 LNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIATRRRNSGLKKKEMVALPTSIYNT------HSPPSLDSNCAICLAEFCDGDNMKLLPKCNHRFHVVCIDEWLLAHSFCPTCRKMIKSNDSVHCLSIVIS 196

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|356510810|ref|XP_003524127.1| (PREDICTED: RING-H2 finger protein ATL44-like [Glycine max])

HSP 1 Score: 179.489 bits (454), Expect = 2.027e-43
Identity = 89/134 (66.42%), Postives = 100/134 (74.63%), Query Frame = 1

Query:  124 MVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXG-CAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSMPSL 522
            MV+LAAI CAFVCALGLN+MLQC    A R  TEP QW+ASRRLNSGLK++EMVALPTSTY+   +             C ICL +FSDGD IR LPKCNH+FHV CIDKWLL HSSCPTCRH LKS+ S+ SL
Sbjct:   32 MVLLAAILCAFVCALGLNTMLQC----ACRVFTEPRQWIASRRLNSGLKRKEMVALPTSTYTTHSSAASSPSSSPNSSTCVICLAEFSDGDPIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLLKSNDSLHSL 161

[Close]

BLAST of ppa012179m vs. NCBI nr
Match: gi|307136410|gb|ADN34219.1| (ring zinc finger [Cucumis melo subsp. melo])

HSP 1 Score: 172.17 bits (435), Expect = 3.236e-41
Identity = 83/145 (57.24%), Postives = 104/145 (71.72%), Query Frame = 1

Query:   79 DPHHDQLQPPNHLNSMVILAAIFCAFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTSTYSADLNTXXXXXXXXXXGCAICLVDFSDGDKIRVLPKCNHWFHVACIDKWLLRHSSCPTCRHRLKSSGSM 513
            DP   +L    + N +VI+ AI CA VC LGLN+ML C+ QCAN +L + VQWVA R LNSG+KK+++VALPTSTY+ +  +           CAICL+DFS+GD IRVLP C H +HV+CIDKWLL HSSCPTCRH+LKS  S+
Sbjct:    2 DPREHELG--GNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYT-NSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI 143

The following BLAST results are available for this feature:

BLAST of ppa012179m vs. Vitis vinifera
BLAST of ppa012179m vs. ExPASy TrEMBL
BLAST of ppa012179m vs. ExPASy Swiss-Prot
BLAST of ppa012179m vs. TAIR10
BLAST of ppa012179m vs. Populus trichicarpa v2.0
BLAST of ppa012179m vs. GDR
BLAST of ppa012179m vs. NCBI nr

BLAST of ppa012179m vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Vitis vinifera)
Total hits: 25


Match Name	E-value	Identity	Description
GSVIVT01032684001	3.747e-31	46.83	assembled CDS	[more]
GSVIVT01022306001	3.755e-23	37.33	assembled CDS	[more]
GSVIVT01026703001	2.882e-15	54.72	assembled CDS	[more]
GSVIVT01009098001	6.420e-15	35.29	assembled CDS	[more]
GSVIVT01016564001	1.868e-14	60.00	assembled CDS	[more]
GSVIVT01000015001	3.186e-14	31.03	assembled CDS	[more]
GSVIVT01023776001	7.099e-14	35.25	assembled CDS	[more]
GSVIVT01015336001	1.211e-13	54.17	assembled CDS	[more]
GSVIVT01005189001	1.211e-13	42.31	assembled CDS	[more]
GSVIVT01028038001	1.581e-13	43.18	assembled CDS	[more]

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BLAST of ppa012179m vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs UniProt TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9MUM8_POPTR	1.308e-51	70.71	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GY22_POPTR	1.446e-50	67.76	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
I1MGU9_SOYBN	2.088e-49	66.44	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A5ATC5_VITVI	2.727e-49	67.86	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9T5A0_RICCO	9.700e-47	61.39	Ring finger protein, putative OS=Ricinus communis ...	[more]
I1KRJ9_SOYBN	6.287e-46	70.63	Uncharacterized protein OS=Glycine max GN=Gma.2704...	[more]
G7INF2_MEDTR	5.322e-45	60.99	RING-H2 finger protein ATL2A OS=Medicago truncatul...	[more]
I1K379_SOYBN	1.602e-41	67.46	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
E5GCL9_CUCME	3.570e-41	57.24	Ring zinc finger OS=Cucumis melo subsp. melo PE=4 ...	[more]
C5Z7N1_SORBI	1.959e-39	57.55	Putative uncharacterized protein Sb10g026650 OS=So...	[more]

Pages

BLAST of ppa012179m vs. ExPASy Swiss-Prot
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs UniProt Swiss-Prot)
Total hits: 25


Match Name	E-value	Identity	Description
ATL73_ARATH	8.197e-28	45.97	RING-H2 finger protein ATL73 OS=Arabidopsis thalia...	[more]
ATL74_ARATH	1.709e-25	43.65	RING-H2 finger protein ATL74 OS=Arabidopsis thalia...	[more]
ATL72_ARATH	3.808e-25	44.03	RING-H2 finger protein ATL72 OS=Arabidopsis thalia...	[more]
ATL78_ARATH	8.483e-25	41.67	RING-H2 finger protein ATL78 OS=Arabidopsis thalia...	[more]
ATL76_ARATH	1.890e-24	39.53	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis t...	[more]
ATL77_ARATH	1.225e-23	38.46	RING-H2 finger protein ATL77 OS=Arabidopsis thalia...	[more]
ATL10_ARATH	1.225e-23	40.31	RING-H2 finger protein ATL10 OS=Arabidopsis thalia...	[more]
ATL45_ARATH	1.037e-22	42.96	RING-H2 finger protein ATL45 OS=Arabidopsis thalia...	[more]
ATL8_ARATH	2.310e-22	39.71	RING-H2 finger protein ATL8 OS=Arabidopsis thalian...	[more]
ATL80_ARATH	2.310e-22	44.93	RING-H2 finger protein ATL80 OS=Arabidopsis thalia...	[more]

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BLAST of ppa012179m vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs TAIR 10)
Total hits: 25


Match Name	E-value	Identity	Description
AT5G05280.1	8.530e-29	45.97	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT5G01880.1	1.779e-26	43.65	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT3G10910.1	3.962e-26	44.03	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G49230.1	8.827e-26	41.67	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G49210.1	1.966e-25	39.53	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT3G18773.1	1.275e-24	38.46	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G49220.1	1.275e-24	40.31	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT4G35480.1	1.079e-23	42.96	\| Symbols: RHA3B \| RING-H2 finger A3B \| chr4:16852...	[more]
AT1G76410.1	2.404e-23	39.71	\| Symbols: ATL8 \| RING/U-box superfamily protein \|...	[more]
AT1G20823.1	2.404e-23	44.93	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]

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BLAST of ppa012179m vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0)
Total hits: 25


Match Name	E-value	Identity
POPTR_0001s15930.1	3.525e-55	67.97	[more]
POPTR_0003s07270.1	7.350e-53	67.76	[more]
POPTR_0013s09370.1	6.055e-31	48.41	[more]
POPTR_0016s14320.1	1.033e-30	45.00	[more]
POPTR_0001s31710.1	6.695e-30	43.65	[more]
POPTR_0019s02620.1	8.744e-30	42.86	[more]
POPTR_0019s15050.1	2.154e-28	45.59	[more]
POPTR_0019s08600.1	2.813e-28	42.75	[more]
POPTR_0002s00780.1	2.016e-26	44.60	[more]
POPTR_0005s27660.1	3.438e-26	42.95	[more]

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BLAST of ppa012179m vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0)
Total hits: 25


Match Name	E-value	Identity	Description
MDP0000126653	1.612e-71	81.88	MDP0000126653	[more]
MDP0000166108	1.612e-71	81.88	MDP0000166108	[more]
MDP0000803911	5.365e-67	77.36	MDP0000803911	[more]
MDP0000486156	3.881e-33	47.33	MDP0000486156	[more]
MDP0000220790	3.881e-33	47.33	MDP0000220790	[more]
MDP0000231890	1.926e-32	45.32	MDP0000231890	[more]
MDP0000131315	1.926e-32	45.32	MDP0000131315	[more]
MDP0000247371	1.292e-28	46.83	MDP0000247371	[more]
MDP0000252590	6.412e-28	44.44	MDP0000252590	[more]
MDP0000853517	5.428e-27	39.04	MDP0000853517	[more]

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BLAST of ppa012179m vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs NCBI nr )
Total hits: 25


Match Name	E-value	Identity	Description
gi\|224138564\|ref\|XP_002326634.1\|	1.186e-51	70.71	predicted protein [Populus trichocarpa] >gi\|222833...	[more]
gi\|224074133\|ref\|XP_002304266.1\|	1.311e-50	67.76	predicted protein [Populus trichocarpa] >gi\|222841...	[more]
gi\|356558238\|ref\|XP_003547414.1\|	1.893e-49	66.44	PREDICTED: RING-H2 finger protein ATL73-like [Glyc...	[more]
gi\|359472767\|ref\|XP_002275910.2\|	2.472e-49	67.86	PREDICTED: RING-H2 finger protein ATL73 [Vitis vin...	[more]
gi\|147818109\|emb\|CAN67111.1\|	2.472e-49	67.86	hypothetical protein VITISV_025310 [Vitis vinifera...	[more]
gi\|356528138\|ref\|XP_003532662.1\|	6.089e-48	67.39	PREDICTED: RING-H2 finger protein ATL73-like [Glyc...	[more]
gi\|255585451\|ref\|XP_002533419.1\|	8.793e-47	61.39	ring finger protein, putative [Ricinus communis] >...	[more]
gi\|357449215\|ref\|XP_003594884.1\|	4.825e-45	60.99	RING-H2 finger protein ATL2A [Medicago truncatula]...	[more]
gi\|356510810\|ref\|XP_003524127.1\|	2.027e-43	66.42	PREDICTED: RING-H2 finger protein ATL44-like [Glyc...	[more]
gi\|307136410\|gb\|ADN34219.1\|	3.236e-41	57.24	ring zinc finger [Cucumis melo subsp. melo]	[more]

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InterPro

Analysis Name: InterProScan of Prunus persica Whole Genome v1.0
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	Ring finger	coord: 120..161 score: 2.4
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 120..162 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 117..165 score: 1.8
None	No IPR available	PANTHER	PTHR22764	FAMILY NOT NAMED	coord: 40..165 score: 8.2
None	No IPR available	PFAM	PF13639	zf-RING_2	coord: 120..163 score: 4.7
None	No IPR available	SEG	seg	seg	coord: 4..20 score: NAcoord: 109..118 score
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 119..168 score: 9.6
None	No IPR available	SEG	seg	seg	coord: 6..15 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:6287959..6288664-
coding sequence from alignment at scaffold_4:6287959..6288664-

mRNA sequence

>ppa012179m ID=ppa012179m; Name=ppa012179m; organism=Prunus persica; type=mRNA; length=706bp
ACTTGCTTTTGTCTCCCTCAAATGCAAGCTCCCTTTCAGCATGTAAAATC
AACTATGTGCATTGCATAACCCTCCTTTCCACTAATTAATTCTCATCTCT
ATCTTCTCCGCCACTACACTATCAAAAGTTCCCAATTATCTCCACCACTT
CATCTCTATCTCCATGGCTCAAACACCCCCTCCAATTCCTCCAATTCCTC
CAATTCCTAGTCCAACATCAATCAGAACACTCTGTGATCAAGACCCTCAT
CATGATCAACTCCAACCCCCAAACCATCTCAATTCTATGGTCATCTTGGC
AGCCATTTTCTGTGCTTTTGTATGTGCTCTTGGTCTCAACTCCATGTTAC
AATGTGTTTTTCAGTGTGCCAACCGTGCCCTTACCGAACCTGTCCAATGG
GTAGCTTCGCGCAGGCTTAATTCAGGGCTTAAGAAGGAGGAGATGGTAGC
TTTGCCCACTTCAACTTATAGTGCCGATTTGAACACTTCTCCATCATCAT
CATCTTCTTCTTCTTCCGGTTGTGCTATTTGTTTGGTGGACTTTTCTGAT
GGGGACAAGATAAGGGTCCTGCCCAAATGCAACCATTGGTTTCATGTTGC
ATGCATTGACAAATGGTTGCTCCGCCACTCTTCTTGCCCTACTTGCAGGC
ATAGGCTCAAGTCAAGTGGCTCCATGCCCTCTCTTGCTGAAATTGTCACA
ACCTAA

protein sequence of ppa012179m

>ppa012179m ID=ppa012179m; Name=ppa012179m; organism=Prunus persica; type=polypeptide; length=181bp
MAQTPPPIPPIPPIPSPTSIRTLCDQDPHHDQLQPPNHLNSMVILAAIFC
AFVCALGLNSMLQCVFQCANRALTEPVQWVASRRLNSGLKKEEMVALPTS
TYSADLNTSPSSSSSSSSGCAICLVDFSDGDKIRVLPKCNHWFHVACIDK
WLLRHSSCPTCRHRLKSSGSMPSLAEIVTT*

mRNA from alignment at scaffold_4:6287959..6288664-

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>ppa012179m ID=ppa012179m; Name=ppa012179m; organism=Prunus persica; type=mRNA; length=706bp; location=Sequence derived from: scaffold_4:6287959..6288664- (Prunus persica
ACTTGCTTTTGTCTCCCTCAAATGCAAGCTCCCTTTCAGCATGTAAAATC
AACTATGTGCATTGCATAACCCTCCTTTCCACTAATTAATTCTCATCTCT
ATCTTCTCCGCCACTACACTATCAAAAGTTCCCAATTATCTCCACCACTT
CATCTCTATCTCCATGGCTCAAACACCCCCTCCAATTCCTCCAATTCCTC
CAATTCCTAGTCCAACATCAATCAGAACACTCTGTGATCAAGACCCTCAT
CATGATCAACTCCAACCCCCAAACCATCTCAATTCTATGGTCATCTTGGC
AGCCATTTTCTGTGCTTTTGTATGTGCTCTTGGTCTCAACTCCATGTTAC
AATGTGTTTTTCAGTGTGCCAACCGTGCCCTTACCGAACCTGTCCAATGG
GTAGCTTCGCGCAGGCTTAATTCAGGGCTTAAGAAGGAGGAGATGGTAGC
TTTGCCCACTTCAACTTATAGTGCCGATTTGAACACTTCTCCATCATCAT
CATCTTCTTCTTCTTCCGGTTGTGCTATTTGTTTGGTGGACTTTTCTGAT
GGGGACAAGATAAGGGTCCTGCCCAAATGCAACCATTGGTTTCATGTTGC
ATGCATTGACAAATGGTTGCTCCGCCACTCTTCTTGCCCTACTTGCAGGC
ATAGGCTCAAGTCAAGTGGCTCCATGCCCTCTCTTGCTGAAATTGTCACA
ACCTAA

Coding sequence (CDS) from alignment at scaffold_4:6287959..6288664-

>ppa012179m ID=ppa012179m; Name=ppa012179m; organism=Prunus persica; type=CDS; length=543bp; location=Sequence derived from: scaffold_4:6287959..6288664- (Prunus persica
ATGGCTCAAACACCCCCTCCAATTCCTCCAATTCCTCCAATTCCTAGTCC
AACATCAATCAGAACACTCTGTGATCAAGACCCTCATCATGATCAACTCC
AACCCCCAAACCATCTCAATTCTATGGTCATCTTGGCAGCCATTTTCTGT
GCTTTTGTATGTGCTCTTGGTCTCAACTCCATGTTACAATGTGTTTTTCA
GTGTGCCAACCGTGCCCTTACCGAACCTGTCCAATGGGTAGCTTCGCGCA
GGCTTAATTCAGGGCTTAAGAAGGAGGAGATGGTAGCTTTGCCCACTTCA
ACTTATAGTGCCGATTTGAACACTTCTCCATCATCATCATCTTCTTCTTC
TTCCGGTTGTGCTATTTGTTTGGTGGACTTTTCTGATGGGGACAAGATAA
GGGTCCTGCCCAAATGCAACCATTGGTTTCATGTTGCATGCATTGACAAA
TGGTTGCTCCGCCACTCTTCTTGCCCTACTTGCAGGCATAGGCTCAAGTC
AAGTGGCTCCATGCCCTCTCTTGCTGAAATTGTCACAACCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding