ppa019893m, ppa019893m (mRNA) Prunus persica

Transcript Overview


Name	ppa019893m
Unique Name	ppa019893m
Type	mRNA
Organism	Prunus persica (Peach)
Sequence length	423

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_3	supercontig	scaffold_3:16311076..16312045 +	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Prunus persica Whole Genome v1.0 Assembly & Annotation	2012-01-16
InterProScan of Prunus persica Whole Genome v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Vitis vinifera	2012-07-23
BLASTx of Prunus persica v1.0 vs UniProt TrEMBL	2012-07-23
BLASTx of Prunus persica v1.0 vs UniProt Swiss-Prot	2012-07-23
BLASTx of Prunus persica v1.0 vs TAIR 10	2012-07-23
BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs NCBI nr	2012-07-23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ppa019893m.g	ppa019893m.g	Prunus persica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ppa019893m.CDS.1	ppa019893m.CDS.1	Prunus persica	CDS
ppa019893m.CDS.2	ppa019893m.CDS.2	Prunus persica	CDS
ppa019893m.CDS.3	ppa019893m.CDS.3	Prunus persica	CDS
ppa019893m.CDS.4	ppa019893m.CDS.4	Prunus persica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ppa019893m	ppa019893m	Prunus persica	polypeptide

Cross References

External references for this mRNA


Database	Accession
"Phytozome_pacid	17648218"

Homology

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01030490001 (assembled CDS)

HSP 1 Score: 145.591 bits (366), Expect = 6.697e-36
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            LSWS+DEKSLKDAFSSFG+VTEV+I+YD+DSGRSRGFGFV F+KE DA+ A+DAMDGKA LGRPLRV+YALE+VRGG +VVPR  + GD N+
Sbjct:   45 LSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALEKVRGGPIVVPRRLNGGDDNN 136

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01021024001 (assembled CDS)

HSP 1 Score: 99.7525 bits (247), Expect = 4.214e-22
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSG 408
            LS+  D++SLKDAFSSFG+V E +++ DRD+GRSRGFGFVNFT +D A  A  AMDG+ L GR +RV+YA ER  G     PR   SG
Sbjct:   47 LSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNFTSDDSASSALSAMDGQELNGRNIRVSYANERTPG-----PRSGGSG 129

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01007865001 (assembled CDS)

HSP 1 Score: 87.4261 bits (215), Expect = 2.164e-18
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            LS+S D+ SL++AF  +GEV E +++ DR++GRSRGFGFV FT  ++A  A  A+DG+ L GR +RV YA +R R G
Sbjct:   47 LSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYATDRARSG 123

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01038128001 (assembled CDS)

HSP 1 Score: 83.1889 bits (204), Expect = 4.082e-17
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYA 354
            LS+  +E  LKDAF  +GE+ EVK++ D  SG+S+G+GFV FT +DDA +A   MDG++L GR +RVTYA
Sbjct:   36 LSYDTNETILKDAFGQYGEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQSLDGRNIRVTYA 105

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01031973001 (assembled CDS)

HSP 1 Score: 79.337 bits (194), Expect = 5.894e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            L+W+ D++SL+ AFS FGE+ E KI+ DR++GRSRGFGFV F+ E   + A + M+G+ L GR + V  A  R  GG+    R    GD  S
Sbjct:   15 LAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNLDGRNITVNEAQSRGGGGYGGGSRDRGYGDGGS 106

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01033897001 (assembled CDS)

HSP 1 Score: 77.411 bits (189), Expect = 2.240e-15
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR-GGHVVVPR 393
            LS+   EK L + FS +G+V E KIV DR S RS+GFGFV F  E++AQ AR  MDGK L GR + V YA  R   GG + + R
Sbjct:   41 LSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKELNGRTIFVDYAKPRADFGGGMPIAR 124

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01032361001 (assembled CDS)

HSP 1 Score: 75.0998 bits (183), Expect = 1.112e-14
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            +L W +D+  L+  FS  G+V + ++VYDRD+ RSRGFGFV  + E +   A  A+DG++L GR +RV  A ER R G
Sbjct:  193 NLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRRG 270

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01007596001 (assembled CDS)

HSP 1 Score: 72.0182 bits (175), Expect = 9.410e-14
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            +L W +D   L+  FS  G+V E ++V+DR++GRSRGFGFV  + + + + A  A DG+ L GR +RV  A ER R
Sbjct:  227 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPR 302

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01036082001 (assembled CDS)

HSP 1 Score: 70.8626 bits (172), Expect = 2.096e-13
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYAL 357
            +S+S  EK+L +AFS FGEV E KI+ D+   R +GF +V FT+ED+A+ A   M+GK + GR + V YA+
Sbjct:   41 ISFSTTEKTLAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTEMNGKVVDGRTVLVDYAM 111

[Close]

BLAST of ppa019893m vs. Vitis vinifera
Match: GSVIVT01025697001 (assembled CDS)

HSP 1 Score: 70.4774 bits (171), Expect = 2.738e-13
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 1

Query:   97 ECQTQKLKGAQKEGTSLSWSMD------EKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            E   Q+  G + EG  L  +        E +L+  FS  G+VTE +++YDR++GRSRGFGFV +   ++   A +++DG  L GR +RVT A  R R
Sbjct:   28 EAAAQQFNGYELEGRQLRVNSGPPPARRENTLETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEARPR 124

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: B9SH52_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.587e-34
Identity = 70/89 (78.65%), Postives = 85/89 (95.51%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGD 411
            LSWS+DEKSLKDAFSSFGEV+EV+I+YD+DSGRSRGFGFVNF+KE++A  A+DAMDGKALLGRPLR+++ALE+VRGG +VVPRLS +GD
Sbjct:   32 LSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGD 120

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: B9IAJ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_573002 PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.755e-33
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSG 408
            LSWS+DEKSLKDAFSSFG+VTEV I+YDR+SGRSRGFGFV+F KED+A  A+DAMDGKALLGRPLR++YALERVRGG VVVPRL + G
Sbjct:   25 LSWSVDEKSLKDAFSSFGDVTEVNILYDRNSGRSRGFGFVSFCKEDEAVSAKDAMDGKALLGRPLRISYALERVRGGPVVVPRLPNGG 112

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: D7TEC9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01210 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.993e-33
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            LSWS+DEKSLKDAFSSFG+VTEV+I+YD+DSGRSRGFGFV F+KE DA+ A+DAMDGKA LGRPLRV+YALE+VRGG +VVPR  + GD N+
Sbjct:   45 LSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALEKVRGGPIVVPRRLNGGDDNN 136

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: I1KM18_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=Gma.38498 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.309e-32
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1

Query:  139 TSLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDAN 417
            + LSWS+D KSLK+AFSSFG+VTEV IVYD+DSGRSRGFGFV F+ EDDA+ A+DAMDGKALLGRPLR+ +ALE+ RG  VVVPRLSD G  N
Sbjct:   30 SGLSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVN 122

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: G7J6Q3_MEDTR (Glycine-rich RNA-binding protein OS=Medicago truncatula GN=MTR_3g080130 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.779e-31
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDAN 417
            LSWS+DEKSLKDAFSSFG+VTEV+IVYD+DSGR+RGFGFV F+ ED A+ A+DAMDGKALLGRPLR+ +ALE+ RG  VVVPR +D+G  N
Sbjct:   43 LSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFN 133

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: Q9SFB4_ARATH (At3g08000 OS=Arabidopsis thaliana GN=F17A17.34 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.372e-30
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDS 405
            LSWS+DE+SLKDAFSSFGEV EV+I YD+ SGRSRGFGFV+F +E DA  A+DAMDGK LLGRPLR+++ALERVRGG VVVPRL  S
Sbjct:   48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 134

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: D7L739_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_317651 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.629e-29
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDS 405
            LS S+DE+SLKDAFSSFGEV EV+I YD+ SGRSRGFGFV+F +E DA  A+DAMDGK LLGRPLR+++ALERVRGG VVVPRL  S
Sbjct:   47 LSCSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 133

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: B4FBA2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.899e-28
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLS 399
            LSWS+DE+SL DAFSSFG VTEV+I+YD++SGRSRGFGFV+F+ +++A+ A+DAMDGK +LGRPLR+++AL RVRG  V+VPRLS
Sbjct:   55 LSWSVDERSLTDAFSSFGTVTEVRIMYDKNSGRSRGFGFVHFSNDNEAKCAKDAMDGKVMLGRPLRISFALGRVRGASVIVPRLS 139

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: A9STV9_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_37849 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.483e-21
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  136 GTSLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            G  L+W+ DE +L+DAFSSFG VTEVKI+ DRD+GRSRGFGFVNFT  ++A+VA   MDG+ L GR +RV YA ++ R
Sbjct:   50 GAGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVDYATDKAR 127

[Close]

BLAST of ppa019893m vs. ExPASy TrEMBL
Match: D5ACZ8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.855e-21
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTE--------------VKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHV-VVPRLS 399
            L+W  DEK++KDAFS++G+VTE              V+I+YDRDSGRSRGFGF++F+ E  A+ A++ MDGK LLGRPLR+ YA+++   G   VVPRLS
Sbjct:   51 LAWHADEKTIKDAFSTYGDVTEGWPTGGPVYASSNTVRIMYDRDSGRSRGFGFIHFSNESSAEDAKNGMDGKELLGRPLRIDYAIDKPAAGRSRVVPRLS 150

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.852e-16
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SL+DAF+ FG+V + K++ DR++GRSRGFGFVNF  E  A  A   MDGK L GR +RV  A +R
Sbjct:   42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.023e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            +LSW +D+ +LK+ FS  G V + K+VYDRDSGRSRGFGFV ++   +   A D+++G  L GR +RV+ A ER R
Sbjct:  213 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288

HSP 2 Score: 55.0694 bits (131), Expect = 1.418e-7
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRV 345
            +L +S+D  +L   F   G V  V+++YD+ +GRSRGFGFV  + +++ + A    +G  + GR +RV
Sbjct:   93 NLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRV 160

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.173e-15
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRG 372
            L+++ DE++L+D FSSFG ++EV +V DR++ RSRGFGF+ FT  + A VA  AM+G++L GR +RV +A +  RG
Sbjct:   13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.198e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            +LSW +D+ +LK+ FS  G V + K+VYDRDSGRSRGFGFV ++   +   A D+++G  L GR +RV+ A ER R
Sbjct:  214 NLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289

HSP 2 Score: 55.8398 bits (133), Expect = 8.316e-8
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRV 345
            +L +S+D  +L   F   G V  V+++YD+ SGRSRGFGFV  + +++ + A    +G  + GR +RV
Sbjct:   94 NLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRV 161

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.946e-14
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRG 372
            L+++ DE++L+D FSSFG ++EV +V DR++ RSRGFGF+ FT  + A  A  AM+G++L GR +RV +A +  RG
Sbjct:   13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.014e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            L+W+ +++SL+ AFS FG++T+ KI+ DR++GRSRGFGFV F  E   + A + M+G+ L GR + V  A  R  GG
Sbjct:   13 LAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGG 89

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.730e-13
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRG 372
            L+++ DE++L+D FSSFG ++EV +V DR++ RSRGFGF+ FT  + A     AM+G++L GR +RV +A +  RG
Sbjct:   13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.730e-13
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRG 372
            L+W+ DE+SL+ AFS FGE+ + KI+ DR++GRSRGFGFV F  E   + A + M+G+ L GR + V  A  R  G
Sbjct:   15 LAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.259e-13
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            L+W+ D+++L+ AFS +GEV + KI+ DR++GRSRGFGFV F  E   + A + M+G+ L GR + V  A  R  GG
Sbjct:   15 LAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91

[Close]

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.951e-13
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            +L+W +D+ +L+  FS  G+V + K+VYDRDSGRSRGFGFV ++  ++   A +++DG  L GR +RV+ A  R
Sbjct:  194 NLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267

HSP 2 Score: 56.225 bits (134), Expect = 6.367e-8
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRV 345
            +L +S D  +L + F   G V  V+++YD+ +GRSRGFGFV  + +++ + A    +G  L GR LRV
Sbjct:   93 NLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT3G08000.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2555034-2555829 REVERSE LENGTH=143)

HSP 1 Score: 135.961 bits (341), Expect = 7.549e-33
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDS 405
            LSWS+DE+SLKDAFSSFGEV EV+I YD+ SGRSRGFGFV+F +E DA  A+DAMDGK LLGRPLR+++ALERVRGG VVVPRL  S
Sbjct:   48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 134

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT3G23830.2 (| Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136)

HSP 1 Score: 89.7373 bits (221), Expect = 6.204e-19
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SLK AF+SFGEVTE  ++ DR++GRSRGFGFV+F+ ED A  A   MDGK L GR +RV  A ER
Sbjct:   42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT3G23830.1 (| Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136)

HSP 1 Score: 89.7373 bits (221), Expect = 6.204e-19
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SLK AF+SFGEVTE  ++ DR++GRSRGFGFV+F+ ED A  A   MDGK L GR +RV  A ER
Sbjct:   42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT4G13850.4 (| Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=129)

HSP 1 Score: 88.1965 bits (217), Expect = 1.805e-18
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGH 378
            LSW  D+ SL+DAF+ FG+V + K++ DR++GRSRGFGFVNF  E  A  A   MDGK L GR +RV  A +R  GG+
Sbjct:   42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSGGY 119

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT5G61030.1 (| Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309)

HSP 1 Score: 85.8853 bits (211), Expect = 8.959e-18
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            +++SMDE SL++AF+ +GEV + +++ DR++GRSRGFGFV FT  + A  A  A+DG+ L GR ++V YA +R  GG
Sbjct:   47 MAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT4G13850.3 (| Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=144)

HSP 1 Score: 83.9593 bits (206), Expect = 3.404e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SL+DAF+ FG+V + K++ DR++GRSRGFGFVNF  E  A  A   MDGK L GR +RV  A +R
Sbjct:   42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT4G13850.2 (| Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=153)

HSP 1 Score: 83.9593 bits (206), Expect = 3.404e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SL+DAF+ FG+V + K++ DR++GRSRGFGFVNF  E  A  A   MDGK L GR +RV  A +R
Sbjct:   42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT4G13850.1 (| Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=158)

HSP 1 Score: 83.9593 bits (206), Expect = 3.404e-17
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSW  D+ SL+DAF+ FG+V + K++ DR++GRSRGFGFVNF  E  A  A   MDGK L GR +RV  A +R
Sbjct:   42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT1G74230.1 (| Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5 | chr1:27915346-27916857 FORWARD LENGTH=289)

HSP 1 Score: 77.7962 bits (190), Expect = 2.440e-15
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRG 372
            +S+S DE  L++AFS +GEV + KI+ DR++GRSRGF FV FT  ++A  A   +DG+ L GR +RV YA ER  G
Sbjct:   41 ISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYATERGSG 115

[Close]

BLAST of ppa019893m vs. TAIR10
Match: AT2G37220.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289)

HSP 1 Score: 73.9442 bits (180), Expect = 3.523e-14
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            +LSW +D+ +L+  FS  G+V E +++YDRDSGRS+GFGFV +    + Q A  ++DG  L GR +RV+ A  R
Sbjct:  210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

HSP 2 Score: 58.9214 bits (141), Expect = 1.173e-9
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRV 345
            +L +++D   L   F S G V  V+++YD+ +GRSRGFGFV  +   + + A    +G  L GRPLRV
Sbjct:   97 NLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0017s08570.1 ()

HSP 1 Score: 91.2781 bits (225), Expect = 2.401e-19
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            L+WS D++SLKDAFS FGEVTE +++ DRD+GRSRGFGFV++   + A  A  AMDG+ L GR +RV YA ++
Sbjct:   43 LAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEALSAMDGQELGGRNIRVGYATDK 115

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0323s00200.1 ()

HSP 1 Score: 88.9669 bits (219), Expect = 1.191e-18
Identity = 41/73 (56.16%), Postives = 57/73 (78.08%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            L WS D+++LKDAFS FGEVTE +++ DR++GRSRGFGFV++   ++A  A  AMDG+ L GR +RV++A ER
Sbjct:   43 LPWSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNLGGRTVRVSFAEER 115

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0323s00210.2 ()

HSP 1 Score: 85.8853 bits (211), Expect = 1.009e-17
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            L WS D+ +LK+AFS +GEV E +++ DR++GRSRGFGFV++   + A  A+ AMDG+ L GR +RV++A ER R
Sbjct:   21 LPWSADDHTLKEAFSGYGEVIEARVIMDRETGRSRGFGFVSYDSSESASEAQSAMDGQELGGRNVRVSFAEERSR 95

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0323s00210.1 ()

HSP 1 Score: 85.8853 bits (211), Expect = 1.009e-17
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            L WS D+ +LK+AFS +GEV E +++ DR++GRSRGFGFV++   + A  A+ AMDG+ L GR +RV++A ER R
Sbjct:   43 LPWSADDHTLKEAFSGYGEVIEARVIMDRETGRSRGFGFVSYDSSESASEAQSAMDGQELGGRNVRVSFAEERSR 117

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0001s32720.1 ()

HSP 1 Score: 83.1889 bits (204), Expect = 6.538e-17
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            L WS D+ +LK+AFS +GEV E +++ DR++GRSRGFGFV++   ++A  A  AMDG+ L GR +RV++A ER
Sbjct:   43 LPWSTDDHTLKEAFSGYGEVIEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNLGGRTVRVSFAEER 115

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0015s06810.1 ()

HSP 1 Score: 82.4185 bits (202), Expect = 1.115e-16
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            +S+  D+  LK+AF  +G V E +I+ DRD+GRSRGFGFV +T  ++A  A  AMDG+ L GR +RV YA ER
Sbjct:   47 ISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNYATER 119

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0012s05870.1 ()

HSP 1 Score: 81.2629 bits (199), Expect = 2.484e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            +S+  D+ SLK+AF  +G V E +I+ DR++GRSRGFGFV +T  ++A  A  A+DG+ L GR +RV YA ER
Sbjct:   47 ISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYATER 119

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0015s06810.2 ()

HSP 1 Score: 79.337 bits (194), Expect = 9.441e-16
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            +S+  D+  LK+AF  +G V E  I+ DRD+GRSRGFGFV +T  ++A  A  AMDG+ L GR +RV YA ER
Sbjct:   47 ISFQTDDNGLKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNYATER 119

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0644s00220.1 ()

HSP 1 Score: 74.7146 bits (182), Expect = 2.325e-14
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYA-LERVRGGHVVVPR 393
            LS    E  L +AFS +G+V E KIV DR   RS+GFGFV +  ED+AQ A D M+GKAL GR + V YA L+   GG + + R
Sbjct:   46 LSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDEMNGKALNGRVIYVDYAKLKTNFGGGIPIAR 129

[Close]

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Match: POPTR_0004s16260.2 ()

HSP 1 Score: 74.3294 bits (181), Expect = 3.037e-14
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            L+W+  ++SL++AFS +GE+ + KI+ DR++GRSRGFGFV F  E   + A D M+G+ L GR + V  A  R  GG
Sbjct:   14 LAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFNNEKAMRDAIDGMNGQDLDGRNITVNEAQSRGSGG 90

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000226034 (MDP0000226034)

HSP 1 Score: 162.925 bits (411), Expect = 8.530e-41
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            LSWS+DEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNF+KED+AQVA+DAMDGKALLGRPLRVT A+E+VRGG  VVPRL DSGDA++
Sbjct:   11 LSWSVDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPLRVTSAVEKVRGGPAVVPRLPDSGDAST 102

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000294761 (MDP0000294761)

HSP 1 Score: 162.925 bits (411), Expect = 8.530e-41
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            LSWS+DEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNF+KED+AQVA+DAMDGKALLGRPLRVT A+E+VRGG  VVPRL DSGDA++
Sbjct:   57 LSWSVDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPLRVTSAVEKVRGGPAVVPRLPDSGDAST 148

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000294262 (MDP0000294262)

HSP 1 Score: 146.747 bits (369), Expect = 6.326e-36
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRL 396
            LS S+DEKSLKDAFSSFGEVT VKIVYDRDSGRSRGFGFVNF+KED+AQVA+DAMDGKALLGRPLRVT A+E++RGG VVVPRL
Sbjct:  533 LSXSVDEKSLKDAFSSFGEVTXVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPLRVTSAVEKIRGGPVVVPRL 616

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000277020 (MDP0000277020)

HSP 1 Score: 135.961 bits (341), Expect = 1.117e-32
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LSWS+DEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNF+KED+AQVA+DAMDGKALLGRPLRVT A+E+
Sbjct:   57 LSWSVDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFSKEDEAQVAKDAMDGKALLGRPLRVTSAVEK 129

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000216169 (MDP0000216169)

HSP 1 Score: 92.4337 bits (228), Expect = 1.416e-19
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALER 363
            LS+  +++SLK+AFSSFG+VTE +++ DRD+GRSRGFGFVNF  +D A  A  +MDG+ L GR +RV+YA ER
Sbjct:   42 LSFGTNDESLKEAFSSFGDVTEARVITDRDTGRSRGFGFVNFASDDSASSALSSMDGQDLHGRNIRVSYATER 114

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000635271 (MDP0000635271)

HSP 1 Score: 86.6557 bits (213), Expect = 7.769e-18
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            +S+  D++SL++AF  +GEV E +I+ DR+SGRSRGFGF+ FT  ++A  A  A+DG+ L GR +RV YA +R R      P  ++ GD  S
Sbjct:   50 ISYQTDDQSLREAFQKYGEVVEARIIMDRESGRSRGFGFITFTSSEEASSAIQALDGQELHGRRVRVNYATDRPR------PSYNNYGDGQS 135

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000302917 (MDP0000302917)

HSP 1 Score: 86.2705 bits (212), Expect = 1.015e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            +S+  D++SL++AF  +GEV + +I+ DR+SGRSRGFGFV FT  ++A  A +A+DG+ L GR +RV YA ER R      P  ++ GD  +
Sbjct:   50 VSYQTDDQSLREAFQKYGEVVDARIIMDRESGRSRGFGFVTFTSNEEAASALEALDGQELHGRRVRVNYATERPR------PSYNNYGDGQN 135

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000255642 (MDP0000255642)

HSP 1 Score: 86.2705 bits (212), Expect = 1.015e-17
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            +S+  D++SL++AF  +GEV + +I+ DR+SGRSRGFGFV FT  ++A  A +A+DG+ L GR +RV YA ER R      P  ++ GD  +
Sbjct:  280 VSYQTDDQSLREAFQKYGEVVDARIIMDRESGRSRGFGFVTFTSNEEAASALEALDGQELHGRRVRVNYATERPR------PSYNNYGDGQN 365

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000218595 (MDP0000218595)

HSP 1 Score: 81.2629 bits (199), Expect = 3.264e-16
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGG 375
            +L W +D+  L+  FS  G+V   ++VYDR+SGRSRGFGFV+F+ E + + A  A+DG++L GR +RV  A ER R G
Sbjct:  220 NLPWQVDDSRLEQVFSEHGKVVSARVVYDRESGRSRGFGFVSFSSETEVEDAIAALDGQSLDGRSIRVNVAEERPRRG 297

[Close]

BLAST of ppa019893m vs. GDR
Match: MDP0000919119 (MDP0000919119)

HSP 1 Score: 78.1814 bits (191), Expect = 2.763e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1

Query:  142 SLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            +L W +D+  L+  FS  G V   ++VYDR+SGRSRGFGFV F+ E +   A  A+DG++L GR +RV  A ER R
Sbjct:  220 NLPWQVDDSRLEQVFSEHGNVVSARVVYDRESGRSRGFGFVTFSSETEVDNAIAALDGQSLDGRSIRVNVAEERPR 295

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|255568699|ref|XP_002525321.1| (glycine-rich RNA-binding protein, putative [Ricinus communis] >gi|223535380|gb|EEF37054.1| glycine-rich RNA-binding protein, putative [Ricinus communis])

HSP 1 Score: 149.828 bits (377), Expect = 1.426e-34
Identity = 70/89 (78.65%), Postives = 85/89 (95.51%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGD 411
            LSWS+DEKSLKDAFSSFGEV+EV+I+YD+DSGRSRGFGFVNF+KE++A  A+DAMDGKALLGRPLR+++ALE+VRGG +VVPRLS +GD
Sbjct:   32 LSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVCAKDAMDGKALLGRPLRISFALEKVRGGPIVVPRLSSAGD 120

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|224131664|ref|XP_002321147.1| (predicted protein [Populus trichocarpa] >gi|222861920|gb|EEE99462.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 146.362 bits (368), Expect = 1.576e-33
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSG 408
            LSWS+DEKSLKDAFSSFG+VTEV I+YDR+SGRSRGFGFV+F KED+A  A+DAMDGKALLGRPLR++YALERVRGG VVVPRL + G
Sbjct:   25 LSWSVDEKSLKDAFSSFGDVTEVNILYDRNSGRSRGFGFVSFCKEDEAVSAKDAMDGKALLGRPLRISYALERVRGGPVVVPRLPNGG 112

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|225447115|ref|XP_002273998.1| (PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial [Vitis vinifera] >gi|297739201|emb|CBI28852.3| unnamed protein product [Vitis vinifera])

HSP 1 Score: 145.591 bits (366), Expect = 2.688e-33
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS 420
            LSWS+DEKSLKDAFSSFG+VTEV+I+YD+DSGRSRGFGFV F+KE DA+ A+DAMDGKA LGRPLRV+YALE+VRGG +VVPR  + GD N+
Sbjct:   45 LSWSVDEKSLKDAFSSFGDVTEVRIMYDKDSGRSRGFGFVYFSKEVDARSAKDAMDGKAFLGRPLRVSYALEKVRGGPIVVPRRLNGGDDNN 136

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|356519721|ref|XP_003528518.1| (PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Glycine max])

HSP 1 Score: 141.739 bits (356), Expect = 3.882e-32
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDAN 417
            LSWS+D KSLK+AFSSFG+VTEV IVYD+DSGRSRGFGFV F+ EDDA+ A+DAMDGKALLGRPLR+ +ALE+ RG  VVVPRLSD G  N
Sbjct:   45 LSWSVDHKSLKEAFSSFGDVTEVTIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHVN 135

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|357462205|ref|XP_003601384.1| (Glycine-rich RNA-binding protein [Medicago truncatula] >gi|355490432|gb|AES71635.1| Glycine-rich RNA-binding protein [Medicago truncatula])

HSP 1 Score: 138.272 bits (347), Expect = 4.292e-31
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDAN 417
            LSWS+DEKSLKDAFSSFG+VTEV+IVYD+DSGR+RGFGFV F+ ED A+ A+DAMDGKALLGRPLR+ +ALE+ RG  VVVPR +D+G  N
Sbjct:   43 LSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFN 133

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|15231912|ref|NP_187457.1| (RNA recognition motif-containing protein [Arabidopsis thaliana] >gi|6648212|gb|AAF21210.1|AC013483_34 putative RNA-binding protein [Arabidopsis thaliana] >gi|45752630|gb|AAS76213.1| At3g08000 [Arabidopsis thaliana] >gi|46359799|gb|AAS88763.1| At3g08000 [Arabidopsis thaliana] >gi|332641108|gb|AEE74629.1| RNA recognition motif-containing protein [Arabidopsis thaliana])

HSP 1 Score: 135.961 bits (341), Expect = 2.130e-30
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDS 405
            LSWS+DE+SLKDAFSSFGEV EV+I YD+ SGRSRGFGFV+F +E DA  A+DAMDGK LLGRPLR+++ALERVRGG VVVPRL  S
Sbjct:   48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 134

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|297833586|ref|XP_002884675.1| (hypothetical protein ARALYDRAFT_317651 [Arabidopsis lyrata subsp. lyrata] >gi|297330515|gb|EFH60934.1| hypothetical protein ARALYDRAFT_317651 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 130.954 bits (328), Expect = 6.853e-29
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDS 405
            LS S+DE+SLKDAFSSFGEV EV+I YD+ SGRSRGFGFV+F +E DA  A+DAMDGK LLGRPLR+++ALERVRGG VVVPRL  S
Sbjct:   47 LSCSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 133

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|212274941|ref|NP_001130982.1| (uncharacterized protein LOC100192087 [Zea mays] >gi|194690622|gb|ACF79395.1| unknown [Zea mays])

HSP 1 Score: 129.028 bits (323), Expect = 2.604e-28
Identity = 59/85 (69.41%), Postives = 77/85 (90.59%), Query Frame = 1

Query:  145 LSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLS 399
            LSWS+DE+SL DAFSSFG VTEV+I+YD++SGRSRGFGFV+F+ +++A+ A+DAMDGK +LGRPLR+++AL RVRG  V+VPRLS
Sbjct:   55 LSWSVDERSLTDAFSSFGTVTEVRIMYDKNSGRSRGFGFVHFSNDNEAKCAKDAMDGKVMLGRPLRISFALGRVRGASVIVPRLS 139

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|357131533|ref|XP_003567391.1| (PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Brachypodium distachyon])

HSP 1 Score: 125.176 bits (313), Expect = 3.760e-27
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 1

Query:    4 PPWHGPEFSEAPNPNLWVQVPCFGFKHIIYAECQTQKLKGAQKEGTSLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVRGGHVVVPRLS 399
            PP H P  +   NP L+V                             LSWS DE+SL DAFSSFG VTEV+I+YD++SGRSRGFGFV F+ + +A+ A+DAMDGK +LGR L+++YAL +VRGG V+VPRLS
Sbjct:   34 PPSHPPSPAPPSNPKLFV---------------------------AGLSWSADERSLMDAFSSFGTVTEVRIMYDKNSGRSRGFGFVQFSNDYEAKCAKDAMDGKVMLGRSLKISYALGKVRGGPVIVPRLS 138

[Close]

BLAST of ppa019893m vs. NCBI nr
Match: gi|168034546|ref|XP_001769773.1| (predicted protein [Physcomitrella patens subsp. patens] >gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens])

HSP 1 Score: 105.145 bits (261), Expect = 4.027e-21
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1

Query:  136 GTSLSWSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVARDAMDGKALLGRPLRVTYALERVR 369
            G  L+W+ DE +L+DAFSSFG VTEVKI+ DRD+GRSRGFGFVNFT  ++A+VA   MDG+ L GR +RV YA ++ R
Sbjct:   50 GAGLAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVDYATDKAR 127

The following BLAST results are available for this feature:

BLAST of ppa019893m vs. Vitis vinifera
BLAST of ppa019893m vs. ExPASy TrEMBL
BLAST of ppa019893m vs. ExPASy Swiss-Prot
BLAST of ppa019893m vs. TAIR10
BLAST of ppa019893m vs. Populus trichicarpa v2.0
BLAST of ppa019893m vs. GDR
BLAST of ppa019893m vs. NCBI nr

BLAST of ppa019893m vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Vitis vinifera)
Total hits: 25


Match Name	E-value	Identity	Description
GSVIVT01030490001	6.697e-36	76.09	assembled CDS	[more]
GSVIVT01021024001	4.214e-22	57.95	assembled CDS	[more]
GSVIVT01007865001	2.164e-18	51.95	assembled CDS	[more]
GSVIVT01038128001	4.082e-17	54.29	assembled CDS	[more]
GSVIVT01031973001	5.894e-16	45.65	assembled CDS	[more]
GSVIVT01033897001	2.240e-15	51.19	assembled CDS	[more]
GSVIVT01032361001	1.112e-14	46.15	assembled CDS	[more]
GSVIVT01007596001	9.410e-14	44.74	assembled CDS	[more]
GSVIVT01036082001	2.096e-13	47.89	assembled CDS	[more]
GSVIVT01025697001	2.738e-13	39.18	assembled CDS	[more]

Pages

BLAST of ppa019893m vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs UniProt TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9SH52_RICCO	1.587e-34	78.65	Glycine-rich RNA-binding protein, putative OS=Rici...	[more]
B9IAJ2_POPTR	1.755e-33	80.68	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TEC9_VITVI	2.993e-33	76.09	Putative uncharacterized protein OS=Vitis vinifera...	[more]
I1KM18_SOYBN	3.309e-32	74.19	Uncharacterized protein (Fragment) OS=Glycine max ...	[more]
G7J6Q3_MEDTR	4.779e-31	73.63	Glycine-rich RNA-binding protein OS=Medicago trunc...	[more]
Q9SFB4_ARATH	2.372e-30	75.86	At3g08000 OS=Arabidopsis thaliana GN=F17A17.34 PE=...	[more]
D7L739_ARALL	7.629e-29	74.71	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B4FBA2_MAIZE	2.899e-28	69.41	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
A9STV9_PHYPA	4.483e-21	61.54	Predicted protein (Fragment) OS=Physcomitrella pat...	[more]
D5ACZ8_PICSI	5.855e-21	53.00	Putative uncharacterized protein OS=Picea sitchens...	[more]

Pages

BLAST of ppa019893m vs. ExPASy Swiss-Prot
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs UniProt Swiss-Prot)
Total hits: 25


Match Name	E-value	Identity	Description
GRP2_ARATH	2.852e-16	54.79	Glycine-rich RNA-binding protein 2, mitochondrial ...	[more]
ROC2_NICSY	7.023e-15	50.00	29 kDa ribonucleoprotein B, chloroplastic OS=Nicot...	[more]
RBM3_HUMAN	9.173e-15	50.00	Putative RNA-binding protein 3 OS=Homo sapiens GN=...	[more]
ROC2_NICPL	1.198e-14	50.00	31 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
RBM3_MOUSE	5.946e-14	48.68	Putative RNA-binding protein 3 OS=Mus musculus GN=...	[more]
GRP1_DAUCA	1.014e-13	46.75	Glycine-rich RNA-binding protein OS=Daucus carota ...	[more]
RBM3_RAT	1.730e-13	47.37	Putative RNA-binding protein 3 OS=Rattus norvegicu...	[more]
GRP2_SINAL	1.730e-13	48.68	Glycine-rich RNA-binding protein GRP2A OS=Sinapis ...	[more]
GRP1_SINAL	2.259e-13	46.75	Glycine-rich RNA-binding protein GRP1A OS=Sinapis ...	[more]
ROC1_NICSY	2.951e-13	45.95	29 kDa ribonucleoprotein A, chloroplastic OS=Nicot...	[more]

Pages

BLAST of ppa019893m vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs TAIR 10)
Total hits: 25


Match Name	E-value	Identity	Description
AT3G08000.1	7.549e-33	75.86	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT3G23830.2	6.204e-19	60.27	\| Symbols: GR-RBP4, GRP4 \| glycine-rich RNA-bindin...	[more]
AT3G23830.1	6.204e-19	60.27	\| Symbols: GR-RBP4, GRP4 \| glycine-rich RNA-bindin...	[more]
AT4G13850.4	1.805e-18	53.85	\| Symbols: ATGRP2 \| glycine-rich RNA-binding prote...	[more]
AT5G61030.1	8.959e-18	49.35	\| Symbols: GR-RBP3 \| glycine-rich RNA-binding prot...	[more]
AT4G13850.3	3.404e-17	54.79	\| Symbols: ATGRP2 \| glycine-rich RNA-binding prote...	[more]
AT4G13850.2	3.404e-17	54.79	\| Symbols: ATGRP2 \| glycine-rich RNA-binding prote...	[more]
AT4G13850.1	3.404e-17	54.79	\| Symbols: ATGRP2, GR-RBP2, GRP2 \| glycine-rich RN...	[more]
AT1G74230.1	2.440e-15	51.32	\| Symbols: GR-RBP5 \| glycine-rich RNA-binding prot...	[more]
AT2G37220.1	3.523e-14	45.95	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

Pages

BLAST of ppa019893m vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0)
Total hits: 25


Match Name	E-value	Identity
POPTR_0017s08570.1	2.401e-19	57.53	[more]
POPTR_0323s00200.1	1.191e-18	56.16	[more]
POPTR_0323s00210.2	1.009e-17	52.00	[more]
POPTR_0323s00210.1	1.009e-17	52.00	[more]
POPTR_0001s32720.1	6.538e-17	52.05	[more]
POPTR_0015s06810.1	1.115e-16	52.05	[more]
POPTR_0012s05870.1	2.484e-16	50.68	[more]
POPTR_0015s06810.2	9.441e-16	52.05	[more]
POPTR_0644s00220.1	2.325e-14	50.00	[more]
POPTR_0004s16260.2	3.037e-14	46.75	[more]

Pages

BLAST of ppa019893m vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0)
Total hits: 25


Match Name	E-value	Identity	Description
MDP0000226034	8.530e-41	86.96	MDP0000226034	[more]
MDP0000294761	8.530e-41	86.96	MDP0000294761	[more]
MDP0000294262	6.326e-36	86.90	MDP0000294262	[more]
MDP0000277020	1.117e-32	90.41	MDP0000277020	[more]
MDP0000216169	1.416e-19	58.90	MDP0000216169	[more]
MDP0000635271	7.769e-18	45.65	MDP0000635271	[more]
MDP0000302917	1.015e-17	45.65	MDP0000302917	[more]
MDP0000255642	1.015e-17	45.65	MDP0000255642	[more]
MDP0000218595	3.264e-16	48.72	MDP0000218595	[more]
MDP0000919119	2.763e-15	48.68	MDP0000919119	[more]

Pages

BLAST of ppa019893m vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs NCBI nr )
Total hits: 25


Match Name	E-value	Identity	Description
gi\|255568699\|ref\|XP_002525321.1\|	1.426e-34	78.65	glycine-rich RNA-binding protein, putative [Ricinu...	[more]
gi\|224131664\|ref\|XP_002321147.1\|	1.576e-33	80.68	predicted protein [Populus trichocarpa] >gi\|222861...	[more]
gi\|225447115\|ref\|XP_002273998.1\|	2.688e-33	76.09	PREDICTED: glycine-rich RNA-binding protein 2, mit...	[more]
gi\|356519721\|ref\|XP_003528518.1\|	3.882e-32	75.82	PREDICTED: glycine-rich RNA-binding protein 2, mit...	[more]
gi\|357462205\|ref\|XP_003601384.1\|	4.292e-31	73.63	Glycine-rich RNA-binding protein [Medicago truncat...	[more]
gi\|15231912\|ref\|NP_187457.1\|	2.130e-30	75.86	RNA recognition motif-containing protein [Arabidop...	[more]
gi\|297833586\|ref\|XP_002884675.1\|	6.853e-29	74.71	hypothetical protein ARALYDRAFT_317651 [Arabidopsi...	[more]
gi\|212274941\|ref\|NP_001130982.1\|	2.604e-28	69.41	uncharacterized protein LOC100192087 [Zea mays] >g...	[more]
gi\|357131533\|ref\|XP_003567391.1\|	3.760e-27	50.00	PREDICTED: glycine-rich RNA-binding protein 2, mit...	[more]
gi\|168034546\|ref\|XP_001769773.1\|	4.027e-21	61.54	predicted protein [Physcomitrella patens subsp. pa...	[more]

Pages

InterPro

Analysis Name: InterProScan of Prunus persica Whole Genome v1.0
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..114 score: 9.9
IPR000504	RNA recognition motif domain	SMART	SM00360	RNA recognition motif	coord: 47..116 score: 4.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 48..120 score: 18
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 48..125 score: 7
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 49..125 score: 6
None	No IPR available	PANTHER	PTHR24012:SF161	RNA-BINDING PROTEIN, PUTATIVE	coord: 49..125 score: 6
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 49..123 score: 2.7

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:16311076..16312045+
coding sequence from alignment at scaffold_3:16311076..16312045+

mRNA sequence

>ppa019893m ID=ppa019893m; Name=ppa019893m; organism=Prunus persica; type=mRNA; length=423bp
ATGCCTCCGTGGCACGGACCTGAATTTAGCGAGGCCCCAAACCCAAATTT
GTGGGTCCAAGTCCCATGCTTTGGGTTTAAACACATCATTTACGCAGAGT
GCCAAACCCAGAAGCTCAAAGGTGCGCAAAAAGAAGGAACAAGCTTGTCA
TGGTCGATGGACGAGAAGTCCTTGAAAGACGCTTTCTCTTCCTTCGGGGA
GGTCACTGAAGTGAAGATAGTGTATGACAGAGACTCAGGAAGGTCTAGAG
GCTTTGGATTTGTTAATTTCACCAAGGAAGATGATGCCCAGGTTGCAAGA
GATGCCATGGATGGAAAGGCATTGCTGGGTCGGCCATTGAGGGTTACTTA
TGCTCTAGAAAGAGTTCGAGGCGGACATGTTGTGGTTCCTCGCCTTTCCG
ACAGTGGAGATGCTAACAGTTGA

protein sequence of ppa019893m

>ppa019893m ID=ppa019893m; Name=ppa019893m; organism=Prunus persica; type=polypeptide; length=141bp
MPPWHGPEFSEAPNPNLWVQVPCFGFKHIIYAECQTQKLKGAQKEGTSLS
WSMDEKSLKDAFSSFGEVTEVKIVYDRDSGRSRGFGFVNFTKEDDAQVAR
DAMDGKALLGRPLRVTYALERVRGGHVVVPRLSDSGDANS*

mRNA from alignment at scaffold_3:16311076..16312045+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>ppa019893m ID=ppa019893m; Name=ppa019893m; organism=Prunus persica; type=mRNA; length=970bp; location=Sequence derived from: scaffold_3:16311076..16312045+ (Prunus persica
ATGCCTCCGTGGCACGGACCTGAATTTAGCGAGGCCCCAAACCCAAATTT
GTGGGTCCAAGTCCCATGCTTTGGGTTTAAACACATCATTTACGCAGAGT
GCCAAACCCAGAAGCTCAAAGGTGCGCAAAAAGAAGGAACAAGTCAGAGG
CAGAGAAGCTAGCGAGCAATGAGGAACAACACTTTGTTGACATTCCTTTC
TAGACGAACATCGACAACAACAACCCATAACCCAAATTTACGTTGGCGGT
TCTTCTGTTCACCACCCTCTTCCTCCTCTACTGGCCCAAACAATAAGCTC
TTCGTTGGAGGTCTCTCCCTACTCTCATACCCGTTGGAAGTTGTGTAATT
TTCGTTTTGGTGTGTTTCTATGGTGATATGGCTTTTGGGTCTTGCAGGCT
TGTCATGGTCGATGGACGAGAAGTCCTTGAAAGACGCTTTCTCTTCCTTC
GGGGAGGTCACTGAAGGTAAAGTTTCCTGCTTTATGAACTAACTTGGCTA
CCCAATTTACATATTCTTCATCAGTCATCTATGTGTTCGGTGAAAGGTCC
AAGTGATCACTAGCAATTATGTTTCAATGAGTTAGAAGTTACGCATTGCA
AAGTTGAATTTTTTATATAATAAATGACAGACTCGATTCTATAATCTAAA
TCAGCTGCGCATTTGTATTGTAGTGAAGATAGTGTATGACAGAGACTCAG
GAAGGTCTAGAGGCTTTGGATTTGTTAATTTCACCAAGGAAGATGATGCC
CAGGTTGCAAGAGATGCCATGGATGGAAAGGTGATGCAGAAGTTATAATT
GTCATTTACCAAAATTTGTTGTCTAAGAACATCTTCTGATTGATGTCGTT
CTGTTCTGCTTGCAGGCATTGCTGGGTCGGCCATTGAGGGTTACTTATGC
TCTAGAAAGAGTTCGAGGCGGACATGTTGTGGTTCCTCGCCTTTCCGACA
GTGGAGATGCTAACAGTTGA

Coding sequence (CDS) from alignment at scaffold_3:16311076..16312045+

>ppa019893m ID=ppa019893m; Name=ppa019893m; organism=Prunus persica; type=CDS; length=423bp; location=Sequence derived from: scaffold_3:16311076..16312045+ (Prunus persica
ATGCCTCCGTGGCACGGACCTGAATTTAGCGAGGCCCCAAACCCAAATTT
GTGGGTCCAAGTCCCATGCTTTGGGTTTAAACACATCATTTACGCAGAGT
GCCAAACCCAGAAGCTCAAAGGTGCGCAAAAAGAAGGAACAAGCTTGTCA
TGGTCGATGGACGAGAAGTCCTTGAAAGACGCTTTCTCTTCCTTCGGGGA
GGTCACTGAAGTGAAGATAGTGTATGACAGAGACTCAGGAAGGTCTAGAG
GCTTTGGATTTGTTAATTTCACCAAGGAAGATGATGCCCAGGTTGCAAGA
GATGCCATGGATGGAAAGGCATTGCTGGGTCGGCCATTGAGGGTTACTTA
TGCTCTAGAAAGAGTTCGAGGCGGACATGTTGTGGTTCCTCGCCTTTCCG
ACAGTGGAGATGCTAACAGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding