ppa027227m, ppa027227m (mRNA) Prunus persica

Transcript Overview


Name	ppa027227m
Unique Name	ppa027227m
Type	mRNA
Organism	Prunus persica (Peach)
Sequence length	264

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_4	supercontig	scaffold_4:23072671..23073171 -	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Prunus persica Whole Genome v1.0 Assembly & Annotation	2012-01-16
InterProScan of Prunus persica Whole Genome v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Vitis vinifera	2012-07-23
BLASTx of Prunus persica v1.0 vs UniProt TrEMBL	2012-07-23
BLASTx of Prunus persica v1.0 vs TAIR 10	2012-07-23
BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0	2012-07-23
BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0	2012-07-23
BLASTx of Prunus persica v1.0 vs NCBI nr	2012-07-23

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
ppa027227m.g	ppa027227m.g	Prunus persica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
ppa027227m.CDS.1	ppa027227m.CDS.1	Prunus persica	CDS
ppa027227m.CDS.2	ppa027227m.CDS.2	Prunus persica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ppa027227m	ppa027227m	Prunus persica	polypeptide

Cross References

External references for this mRNA


Database	Accession
"Phytozome_pacid	17643179"

Homology

[Close]

BLAST of ppa027227m vs. Vitis vinifera
Match: GSVIVT01037326001 (assembled CDS)

HSP 1 Score: 91.2781 bits (225), Expect = 9.021e-20
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KNA  SVPQFGGWDQ     TNY+++F+QARAN+KQ K D+     NSLGNE+E L              VMRK+  LTYINCCIRP
Sbjct:   54 KNAWMSVPQFGGWDQKTGGATNYSMIFSQARANKKQQKADI----NNSLGNERE-LTPRRQYPHQQQEESVMRKRKFLTYINCCIRP 135

[Close]

BLAST of ppa027227m vs. Vitis vinifera
Match: GSVIVT01022234001 (assembled CDS)

HSP 1 Score: 52.7582 bits (125), Expect = 3.556e-8
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLA 171
            SVPQFG WDQ G  P +Y++ F++ R  RKQNK D++   R SLGNE+E +A
Sbjct:   13 SVPQFGDWDQKGQVP-DYSLDFSKIREMRKQNKRDVS---RASLGNEEELVA 60

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: I1MDY4_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.119e-18
Identity = 49/95 (51.58%), Postives = 58/95 (61.05%), Query Frame = 1

Query:    7 ARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA----------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            A  SVPQFGGWDQ  P  T+Y++VFTQARAN+KQ KT+LTE K  SLGNE++   A                      V+ KK ILTY+NCCIRP
Sbjct:    4 AMMSVPQFGGWDQKAPGATDYSMVFTQARANKKQQKTNLTEIKHRSLGNERDIANAKHGKAHHHHHVHGHSHAHEEPLVVGKKKILTYVNCCIRP 98

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: F6HA93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02800 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.765e-17
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KNA  SVPQFGGWDQ     TNY+++F+QARAN+KQ K D+     NSLGNE+E L              VMRK+  LTYINCCIRP
Sbjct:    7 KNAWMSVPQFGGWDQKTGGATNYSMIFSQARANKKQQKADI----NNSLGNERE-LTPRRQYPHQQQEESVMRKRKFLTYINCCIRP 88

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: D7LZ84_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488838 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.835e-17
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 1

Query:   19 VPQFGGWDQNGP-DPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            VPQFGGWDQ GP D TNY+VVF+QARANRKQNK  +   + +SLG+EQE +A+                   VM+KK ILTYINCCIRP
Sbjct:   13 VPQFGGWDQKGPNDATNYSVVFSQARANRKQNKAVV---RHSSLGSEQELMASVRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: F4K158_ARATH (RPM1-interacting protein 4 (RIN4) family protein OS=Arabidopsis thaliana GN=At5g19473 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.385e-16
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 1

Query:   19 VPQFGGWDQNGP-DPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            VPQFGGWDQ GP D TNY+VVF++ARANRKQNK  +   + +SLG+EQE + +                   VM+KK ILTYINCCIRP
Sbjct:   13 VPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQELMVSVRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: G7K316_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_5g089290 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.727e-16
Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-----------------------------------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            K+A+ SVPQFG WDQ     TNY++VFTQARAN+KQ KTDLTE KR+S+G E+E + A                                               VM K+ ILTYINCCIRP
Sbjct:    9 KHAKSSVPQFGAWDQKTMGATNYSMVFTQARANKKQQKTDLTEVKRSSIGTEEELVKAINHRHGHPPQGYHAQPAHGRAPPAQVQANAQVHANANANAQVQEDPVVMGKRRILTYINCCIRP 130

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: I1JIW2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.769e-16
Identity = 45/93 (48.39%), Postives = 54/93 (58.06%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL-----------AAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            SVPQFGGWDQN P   +YTV+FTQAR N+K  K +L E +R S G+E++F+                         VM KK ILTYINCCIRP
Sbjct:    8 SVPQFGGWDQNEPGAIDYTVMFTQARENKKHQKANLIEIRRKSFGSERDFVNSNHGRAPRHHVRSHTHSHAHEDHVVMGKKRILTYINCCIRP 100

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: B9HNI8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557714 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.118e-11
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA 174
            KN   SVPQFG WD   P PTNY++VFT+ARANRKQ+K+D+   +  SLGNE+E LAA
Sbjct:    4 KNGGLSVPQFGAWDSKNPVPTNYSMVFTRARANRKQHKSDV---RHASLGNERELLAA 58

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: G7JAB0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g094970 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.511e-8
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLA----------AXXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ GP P +Y++ F++ R  RKQNKT+ +   R SLGNE+EF A          +             +R+++ ++Y NCCI+
Sbjct:   13 SVPQFGEWDQKGPLP-DYSMDFSKIREMRKQNKTNAS---RASLGNEEEFAAPTQKNVKADHSEPQHPHYHKTNSAVRRRSFMSYFNCCIK 99

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: I1KTA3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.670e-7
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL------------AAXXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ G  P +Y++ F++ R  RKQNKT+++   R SLGNE+EF+            ++               +K+ L+Y NCC++
Sbjct:   13 SVPQFGDWDQKGQVP-DYSLDFSKIRETRKQNKTNIS---RASLGNEEEFMDSTTSSSVNTAHSSEHPQPHYHQTHSPTARKSFLSYFNCCVK 101

[Close]

BLAST of ppa027227m vs. ExPASy TrEMBL
Match: C6SXU9_SOYBN (Uncharacterized protein OS=Glycine max GN=Gma.33275 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.670e-7
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL------------AAXXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ G  P +Y++ F++ R  RKQNKT+++   R SLGNE+EF+            ++               +K+ L+Y NCC++
Sbjct:   13 SVPQFGDWDQKGQVP-DYSLDFSKIRETRKQNKTNIS---RASLGNEEEFMDSTTSSSVNTGHSSEHPQPHYHQTNSPTARKSFLSYFNCCVK 101

[Close]

BLAST of ppa027227m vs. TAIR10
Match: AT5G19473.1 (| Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:6569268-6570680 FORWARD LENGTH=99)

HSP 1 Score: 88.5817 bits (218), Expect = 8.623e-19
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 1

Query:   19 VPQFGGWDQNGP-DPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            VPQFGGWDQ GP D TNY+VVF++ARANRKQNK  +   + +SLG+EQE + +                   VM+KK ILTYINCCIRP
Sbjct:   13 VPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQELMVSVRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98

[Close]

BLAST of ppa027227m vs. TAIR10
Match: AT5G09960.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112)

HSP 1 Score: 48.521 bits (114), Expect = 9.889e-7
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDP-TNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL 168
            SVPQFG WDQ G     +Y++ FT+ R  RKQNK D +   R SLGNE+E +
Sbjct:   14 SVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPS---RASLGNEEELI 62

[Close]

BLAST of ppa027227m vs. Populus trichicarpa v2.0
Match: POPTR_0001s28010.1 ()

HSP 1 Score: 94.7449 bits (234), Expect = 1.402e-20
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KN   SVPQFGGW+   P PT+Y+VVFTQARANR+Q+K+D+   +  SLGNE+E LAA            VM++K  LTYINCCIRP
Sbjct:    6 KNGGLSVPQFGGWNSKNPVPTDYSVVFTQARANRRQHKSDV---RHASLGNERELLAA-----ANQQEDSVMKRKKFLTYINCCIRP 84

[Close]

BLAST of ppa027227m vs. Populus trichicarpa v2.0
Match: POPTR_0009s07190.1 ()

HSP 1 Score: 92.4337 bits (228), Expect = 6.956e-20
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KN   SVPQFG WD   P PTNY++VFT+ARANRKQ+K+D+   +  SLGNE+E LAA            VM++  ILTYI+CCIRP
Sbjct:   24 KNGGLSVPQFGAWDSKNPVPTNYSMVFTRARANRKQHKSDV---RHASLGNERELLAA-----ACQQEEPVMKRNKILTYIHCCIRP 102

[Close]

BLAST of ppa027227m vs. Populus trichicarpa v2.0
Match: POPTR_0007s06610.1 ()

HSP 1 Score: 53.5286 bits (127), Expect = 3.581e-8
Identity = 33/95 (34.74%), Postives = 48/95 (50.53%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMR--------------KKTILTYINCCIR 258
            SVPQFG WDQ G  P +Y++ F++ R  RKQNK D++   R SLGNE+E +                R              +++I +Y NCC++
Sbjct:   14 SVPQFGDWDQKGELP-DYSLDFSKIREMRKQNKKDVS---RASLGNEEELINPTATAAKPAQTQDHHRHHHYHEGHHHSPTTRRSIFSYFNCCVK 104

[Close]

BLAST of ppa027227m vs. Populus trichicarpa v2.0
Match: POPTR_0005s08670.1 ()

HSP 1 Score: 50.8322 bits (120), Expect = 2.321e-7
Identity = 32/93 (34.41%), Postives = 45/93 (48.39%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA------------XXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ G  P +Y+V F++ R  RKQNK D +   R SLG E+E +                             +++I +Y NCC++
Sbjct:   14 SVPQFGDWDQKGELP-DYSVDFSKIREMRKQNKRDAS---RASLGKEEELINPTATTAKTAQTHDHRHHYHQDHHDSPATRRSIFSYFNCCVK 102

[Close]

BLAST of ppa027227m vs. GDR
Match: MDP0000248505 (MDP0000248505)

HSP 1 Score: 107.071 bits (266), Expect = 3.764e-24
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA 174
            KN R+SVPQFGGWDQN PD TNYTVVF+QARANRKQNKT+LTEFKRNSLGNEQEF+AA
Sbjct:   50 KNGRKSVPQFGGWDQNSPD-TNYTVVFSQARANRKQNKTNLTEFKRNSLGNEQEFMAA 106

[Close]

BLAST of ppa027227m vs. GDR
Match: MDP0000898826 (MDP0000898826)

HSP 1 Score: 53.1434 bits (126), Expect = 6.450e-8
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA 174
            SVPQFG WDQ G  P +Y++ F++ R  RKQNK D++   R SLGNE+E +A+
Sbjct:    9 SVPQFGDWDQKGQVP-DYSLDFSKIREMRKQNKRDVS---RASLGNEEELVAS 57

[Close]

BLAST of ppa027227m vs. GDR
Match: MDP0000677189 (MDP0000677189)

HSP 1 Score: 53.1434 bits (126), Expect = 6.450e-8
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA 174
            SVPQFG WDQ G  P +Y++ F++ R  RKQNK D++   R SLGNE+E +A+
Sbjct:   29 SVPQFGDWDQKGQVP-DYSLDFSKIREVRKQNKRDVS---RASLGNEEELIAS 77

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|388491578|gb|AFK33855.1| (unknown [Lotus japonicus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.580e-17
Identity = 51/112 (45.54%), Postives = 62/112 (55.36%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------------------------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            K+   +VPQFGGWDQ+ P  T+Y++VFTQARA +KQ K DLT+ KR+SLGNE+EF+ A                                     VM KK ILTYINCCIRP
Sbjct:    7 KHGVTTVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNEREFINANRGHHHAHQGLGHAHHGHGHAYHGHGHGHGHAHEEPIVMGKKRILTYINCCIRP 118

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|296083878|emb|CBI24266.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 91.2781 bits (225), Expect = 6.006e-17
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KNA  SVPQFGGWDQ     TNY+++F+QARAN+KQ K D+     NSLGNE+E L              VMRK+  LTYINCCIRP
Sbjct:   54 KNAWMSVPQFGGWDQKTGGATNYSMIFSQARANKKQQKADI----NNSLGNERE-LTPRRQYPHQQQEESVMRKRKFLTYINCCIRP 135

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|225466779|ref|XP_002270722.1| (PREDICTED: uncharacterized protein LOC100255134 [Vitis vinifera])

HSP 1 Score: 91.2781 bits (225), Expect = 6.006e-17
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            KNA  SVPQFGGWDQ     TNY+++F+QARAN+KQ K D+     NSLGNE+E L              VMRK+  LTYINCCIRP
Sbjct:    7 KNAWMSVPQFGGWDQKTGGATNYSMIFSQARANKKQQKADI----NNSLGNERE-LTPRRQYPHQQQEESVMRKRKFLTYINCCIRP 88

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|297808009|ref|XP_002871888.1| (hypothetical protein ARALYDRAFT_488838 [Arabidopsis lyrata subsp. lyrata] >gi|297317725|gb|EFH48147.1| hypothetical protein ARALYDRAFT_488838 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 90.8929 bits (224), Expect = 7.843e-17
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 1

Query:   19 VPQFGGWDQNGP-DPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            VPQFGGWDQ GP D TNY+VVF+QARANRKQNK  +   + +SLG+EQE +A+                   VM+KK ILTYINCCIRP
Sbjct:   13 VPQFGGWDQKGPNDATNYSVVFSQARANRKQNKAVV---RHSSLGSEQELMASVRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|79328154|ref|NP_001031906.1| (RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana] >gi|332005330|gb|AED92713.1| RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana])

HSP 1 Score: 88.5817 bits (218), Expect = 3.893e-16
Identity = 48/89 (53.93%), Postives = 58/89 (65.17%), Query Frame = 1

Query:   19 VPQFGGWDQNGP-DPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            VPQFGGWDQ GP D TNY+VVF++ARANRKQNK  +   + +SLG+EQE + +                   VM+KK ILTYINCCIRP
Sbjct:   13 VPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQELMVSVRRNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|357493881|ref|XP_003617229.1| (hypothetical protein MTR_5g089290 [Medicago truncatula] >gi|355518564|gb|AET00188.1| hypothetical protein MTR_5g089290 [Medicago truncatula])

HSP 1 Score: 88.1965 bits (217), Expect = 5.084e-16
Identity = 51/122 (41.80%), Postives = 61/122 (50.00%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA-----------------------------------XXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            K+A+ SVPQFG WDQ     TNY++VFTQARAN+KQ KTDLTE KR+S+G E+E + A                                               VM K+ ILTYINCCIRP
Sbjct:    9 KHAKSSVPQFGAWDQKTMGATNYSMVFTQARANKKQQKTDLTEVKRSSIGTEEELVKAINHRHGHPPQGYHAQPAHGRAPPAQVQANAQVHANANANAQVQEDPVVMGKRRILTYINCCIRP 130

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|224106007|ref|XP_002314011.1| (predicted protein [Populus trichocarpa] >gi|222850419|gb|EEE87966.1| predicted protein [Populus trichocarpa])

HSP 1 Score: 73.9442 bits (180), Expect = 9.922e-12
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA 174
            KN   SVPQFG WD   P PTNY++VFT+ARANRKQ+K+D+   +  SLGNE+E LAA
Sbjct:    4 KNGGLSVPQFGAWDSKNPVPTNYSMVFTRARANRKQHKSDV---RHASLGNERELLAA 58

[Close]

BLAST of ppa027227m vs. NCBI nr
Match: gi|388511199|gb|AFK43661.1| (unknown [Lotus japonicus])

HSP 1 Score: 71.2478 bits (173), Expect = 6.431e-11
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 1

Query:    1 KNARRSVPQFGGWDQNGPD-PTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLA-----------------AXXXXXXXXXXXXVMRKKTILTYINCCIRP 261
            K A+ SVPQFGGW+      PT+Y++VF QARAN+K  KTDL E KR S GN+Q+                                 VM +  +LT ++CCIRP
Sbjct:    6 KPAKMSVPQFGGWEHKAQGVPTDYSMVFNQARANKKNQKTDLAEVKRLSTGNDQKVATNNANYRHGPPPQAHAHPRAHAHARPHEDPPVMGRSRVLTCMSCCIRP 110

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BLAST of ppa027227m vs. NCBI nr
Match: gi|357464419|ref|XP_003602491.1| (hypothetical protein MTR_3g094970 [Medicago truncatula] >gi|355491539|gb|AES72742.1| hypothetical protein MTR_3g094970 [Medicago truncatula])

HSP 1 Score: 63.5438 bits (153), Expect = 1.341e-8
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLA----------AXXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ GP P +Y++ F++ R  RKQNKT+ +   R SLGNE+EF A          +             +R+++ ++Y NCCI+
Sbjct:   13 SVPQFGEWDQKGPLP-DYSMDFSKIREMRKQNKTNAS---RASLGNEEEFAAPTQKNVKADHSEPQHPHYHKTNSAVRRRSFMSYFNCCIK 99

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BLAST of ppa027227m vs. NCBI nr
Match: gi|356525541|ref|XP_003531383.1| (PREDICTED: uncharacterized protein LOC100785896 isoform 1 [Glycine max])

HSP 1 Score: 60.077 bits (144), Expect = 1.483e-7
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1

Query:   16 SVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFL------------AAXXXXXXXXXXXXVMRKKTILTYINCCIR 258
            SVPQFG WDQ G  P +Y++ F++ R  RKQNKT+++   R SLGNE+EF+            ++               +K+ L+Y NCC++
Sbjct:   13 SVPQFGDWDQKGQVP-DYSLDFSKIRETRKQNKTNIS---RASLGNEEEFMDSTTSSSVNTAHSSEHPQPHYHQTHSPTARKSFLSYFNCCVK 101

The following BLAST results are available for this feature:

BLAST of ppa027227m vs. Vitis vinifera
BLAST of ppa027227m vs. ExPASy TrEMBL
BLAST of ppa027227m vs. TAIR10
BLAST of ppa027227m vs. Populus trichicarpa v2.0
BLAST of ppa027227m vs. GDR
BLAST of ppa027227m vs. NCBI nr

BLAST of ppa027227m vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Vitis vinifera)
Total hits: 2


Match Name	E-value	Identity	Description
GSVIVT01037326001	9.021e-20	55.17	assembled CDS	[more]
GSVIVT01022234001	3.556e-8	53.85	assembled CDS	[more]

BLAST of ppa027227m vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs UniProt TrEMBL)
Total hits: 11


Match Name	E-value	Identity	Description
I1MDY4_SOYBN	6.119e-18	51.58	Uncharacterized protein (Fragment) OS=Glycine max ...	[more]
F6HA93_VITVI	6.765e-17	55.17	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LZ84_ARALL	8.835e-17	56.18	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
F4K158_ARATH	4.385e-16	53.93	RPM1-interacting protein 4 (RIN4) family protein O...	[more]
G7K316_MEDTR	5.727e-16	41.80	Putative uncharacterized protein OS=Medicago trunc...	[more]
I1JIW2_SOYBN	9.769e-16	48.39	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
B9HNI8_POPTR	1.118e-11	62.07	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
G7JAB0_MEDTR	1.511e-8	39.56	Putative uncharacterized protein OS=Medicago trunc...	[more]
I1KTA3_SOYBN	1.670e-7	36.56	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
C6SXU9_SOYBN	1.670e-7	36.56	Uncharacterized protein OS=Glycine max GN=Gma.3327...	[more]

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BLAST of ppa027227m vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs TAIR 10)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G19473.1	8.623e-19	53.93	\| Symbols: \| RPM1-interacting protein 4 (RIN4) fa...	[more]
AT5G09960.1	9.889e-7	51.92	\| Symbols: \| FUNCTIONS IN: molecular_function unk...	[more]

BLAST of ppa027227m vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Populus trichocarpa v2.0)
Total hits: 4


Match Name	E-value	Identity
POPTR_0001s28010.1	1.402e-20	56.32	[more]
POPTR_0009s07190.1	6.956e-20	55.17	[more]
POPTR_0007s06610.1	3.581e-8	34.74	[more]
POPTR_0005s08670.1	2.321e-7	34.41	[more]

BLAST of ppa027227m vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs Malus x domestica v1.0)
Total hits: 3


Match Name	E-value	Identity	Description
MDP0000248505	3.764e-24	87.93	MDP0000248505	[more]
MDP0000898826	6.450e-8	52.83	MDP0000898826	[more]
MDP0000677189	6.450e-8	52.83	MDP0000677189	[more]

BLAST of ppa027227m vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Prunus persica v1.0 vs NCBI nr )
Total hits: 13


Match Name	E-value	Identity	Description
gi\|388491578\|gb\|AFK33855.1\|	1.580e-17	45.54	unknown [Lotus japonicus]	[more]
gi\|296083878\|emb\|CBI24266.3\|	6.006e-17	55.17	unnamed protein product [Vitis vinifera]	[more]
gi\|225466779\|ref\|XP_002270722.1\|	6.006e-17	55.17	PREDICTED: uncharacterized protein LOC100255134 [V...	[more]
gi\|297808009\|ref\|XP_002871888.1\|	7.843e-17	56.18	hypothetical protein ARALYDRAFT_488838 [Arabidopsi...	[more]
gi\|79328154\|ref\|NP_001031906.1\|	3.893e-16	53.93	RPM1-interacting protein 4 (RIN4) family protein [...	[more]
gi\|357493881\|ref\|XP_003617229.1\|	5.084e-16	41.80	hypothetical protein MTR_5g089290 [Medicago trunca...	[more]
gi\|224106007\|ref\|XP_002314011.1\|	9.922e-12	62.07	predicted protein [Populus trichocarpa] >gi\|222850...	[more]
gi\|388511199\|gb\|AFK43661.1\|	6.431e-11	39.05	unknown [Lotus japonicus]	[more]
gi\|357464419\|ref\|XP_003602491.1\|	1.341e-8	39.56	hypothetical protein MTR_3g094970 [Medicago trunca...	[more]
gi\|356525541\|ref\|XP_003531383.1\|	1.483e-7	36.56	PREDICTED: uncharacterized protein LOC100785896 is...	[more]

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InterPro

Analysis Name: InterProScan of Prunus persica Whole Genome v1.0
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	Pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..36 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 59..70 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:23072671..23073171-
coding sequence from alignment at scaffold_4:23072671..23073171-

mRNA sequence

>ppa027227m ID=ppa027227m; Name=ppa027227m; organism=Prunus persica; type=mRNA; length=264bp
AAAAATGCTCGGAGGTCTGTCCCTCAGTTCGGAGGATGGGATCAAAATGG
CCCAGATCCTACAAACTACACCGTGGTGTTCACCCAAGCTCGTGCTAACA
GGAAGCAAAACAAGACAGACTTGACTGAGTTCAAGCGCAACAGCCTGGGG
AATGAACAGGAATTCTTGGCTGCTCATTCTCAACATGGTCATCATCAACA
AGACGATTCTGTCATGAGGAAAAAGACGATTCTGACCTACATAAATTGCT
GTATTAGGCCTTGA

protein sequence of ppa027227m

>ppa027227m ID=ppa027227m; Name=ppa027227m; organism=Prunus persica; type=polypeptide; length=88bp
KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLG
NEQEFLAAHSQHGHHQQDDSVMRKKTILTYINCCIRP*

mRNA from alignment at scaffold_4:23072671..23073171-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>ppa027227m ID=ppa027227m; Name=ppa027227m; organism=Prunus persica; type=mRNA; length=501bp; location=Sequence derived from: scaffold_4:23072671..23073171- (Prunus persica
AAAAATGCTCGGAGGTCTGTCCCTCAGTTCGGAGGATGGGATCAAAATGG
CCCAGATCCTACAAACTACACCGTGGTGTTCACCCAAGCTCGTGCTAACA
GGAAGCAAAACAAGACAGACTTGACTGAGTTCAAGCGCAACAGCCTGGGG
AATGAACAGGAATTCTTGGCTGCTCATTCTCAACATGGTCATCATCAACA
AGACGATTCTGTCATGGTAAGACACTACTTTTCCCATCCTTACTTCTGCA
ACGTTATTGTCATCTTTTTGCTAATTAAGTAACATAGGTTAAGAACCCGT
TTGGGACTCCTTCTGTAGGAAGCACTTCTACTCATAAACGCGTTTTCAAA
AAGTACCTCAATTAAAACAAAACCAAAAGGAAAAATAAGATGAAAGCACA
ATTCTGCTACATAAGCTTTCTTTCTAATTTTATTCACATTTATTTTCATG
CAGAGGAAAAAGACGATTCTGACCTACATAAATTGCTGTATTAGGCCTTG
A

Coding sequence (CDS) from alignment at scaffold_4:23072671..23073171-

>ppa027227m ID=ppa027227m; Name=ppa027227m; organism=Prunus persica; type=CDS; length=264bp; location=Sequence derived from: scaffold_4:23072671..23073171- (Prunus persica
AAAAATGCTCGGAGGTCTGTCCCTCAGTTCGGAGGATGGGATCAAAATGG
CCCAGATCCTACAAACTACACCGTGGTGTTCACCCAAGCTCGTGCTAACA
GGAAGCAAAACAAGACAGACTTGACTGAGTTCAAGCGCAACAGCCTGGGG
AATGAACAGGAATTCTTGGCTGCTCATTCTCAACATGGTCATCATCAACA
AGACGATTCTGTCATGAGGAAAAAGACGATTCTGACCTACATAAATTGCT
GTATTAGGCCTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave