Ripening Time, qRP.VV-Ch4-2012 (QTL) Prunus persica | GDR

QTL Overview


QTL Label	qRPT.VV-Ch4-2012
Published Symbol	QTLMD2012
Trait Name	fruit ripe 100%
Trait Alias	maturity. date.
Trait Study	Peach Fruit Quality-Meneses-2015
Population	Venus_ x_Venus-F2
Female Parent	N/A
Male Parent	N/A
Colocalizing Marker	CBV_ANAC072
Neighboring Marker	N/A
Environment	N/A
LOD	N/A
Additivity Dominance Ratio	N/A
R2	N/A
Comments	N/A

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference	MapViewer
Pp04	chromosome	Pp04:11116962..11117853 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	GDR QTL alignment to genome using associated markers	View
chr_4	chromosome	chr_4:15991138..15992022 .	Prunus avium Tieton Genome v2.0 Assembly & Annotation	GDR QTL alignment to genome using associated markers	View
Pd04	chromosome	Pd04:11468231..11469123 .	Prunus dulcis Lauranne Genome v1.0	GDR QTL alignment to genome using associated markers	View
Pp04	chromosome	Pp04:12999678..13000569 .	Prunus persica Lovell 5D Genome v1.0	GDR QTL alignment to genome using associated markers	View
Pp04	chromosome	Pp04:11622460..11623351 .	Prunus persica Lovell 2D Genome v3.0	GDR QTL alignment to genome using associated markers	View
chr4	chromosome	chr4:12837363..12838254 .	Prunus armeniaca cv.Stella Whole Genome v1.0 Assembly & Annotation	GDR QTL alignment to genome using associated markers	View
Chr04-F0	chromosome	Chr04-F0:12923714..12924605 .	Prunus dulcis Texas Genome v3.0 Assembly & Annotation	GDR QTL alignment to genome using associated markers	View
PAV04_REGINA	chromosome	PAV04_REGINA:14259517..14260400 .	Prunus avium Regina Genome v1.0 Assembly & Annotation	GDR QTL alignment to genome using associated markers	View

Publications


Year	Publication
2015	Nuñez-Lillo G, Cifuentes-Esquivel A, Troggio M, Micheletti D, Infante R, Campos-Vargas R, Orellana A, Blanco-Herrera F, Meneses C. Identification of candidate genes associated with mealiness and maturity date in peach [Prunus persica (L.) Batsch] using QTL analysis and deep sequencing. Tree Genetics & Genomes 2015, 11:86

Germplasm


Stock Name	Type
Venus	accession

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Peak	Span Start	Span Stop	MapViewer
1	Peach-VV-F2	G4	N/A	N/A	36	-	-	View

Sequences

The following sequences are available for this feature:

QTL from alignment at Pp04:11116962..11117853
QTL from alignment at chr_4:15991138..15992022
QTL from alignment at Pd04:11468231..11469123
QTL from alignment at Pp04:12999678..13000569
QTL from alignment at Pp04:11622460..11623351
QTL from alignment at chr4:12837363..12838254
QTL from alignment at Chr04-F0:12923714..12924605
QTL from alignment at PAV04_REGINA:14259517..14260400

QTL from alignment at Pp04:11116962..11117853

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=892bp; location=Sequence derived from: Pp04:11116962..11117853 (Prunus persica
ATGGGTGTGCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAAACCATT
TCTTATTTGACTATTTTATCCCTACCCATTTCCTGATATGGCTCAATTTG
AACTATATTGAACAATTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTCTTTAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGAATAAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCATGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAGCT
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTGTT
TTTTAAAATTGATTGTGTGATAATGATTTAATCTTTGGGTTTTTTTGTTG
TTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAG
CTCAGCTGCGCAGAAACCCATGACGACGAGCGTTTCGAGCAAAGAGCACA
GCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTTGACGACGTGCTCGAG
TGGCTCCCGGATATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACTC
GCTCAAAACGCTGCAGCAGCAGCAGGAGGACAGCAAGCTCGG

QTL from alignment at chr_4:15991138..15992022

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=885bp; location=Sequence derived from: chr_4:15991138..15992022 (Prunus avium
ATGGGTGTCCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAATATCTGTGTC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAACCCATT
TCTTATTTGACTATTTTATCCCTACCCATTTTTTGATATGGCTCAATTCG
AACTATATTGAACAGTTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAGGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGGATTAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCACGAGTATCGCCTAATCGAACCTTCACGCAAAAATGGCAGCA
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTTTA
TAAATTGATTGTGTGATAATGGTTTAATCTTTGGGTTTTTTGGTTGTTGC
AGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAGCTCA
GCTGCGCAGAAGCCCATGACGACGAGCGTTTCGAGCAAAGAGCACAGCAA
CGGCTCGTCGTCTTCCTGCTCATCTCAGCTGGACGACGTGCTCGAGTGGC
TGCCGGAGATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACTCGCTC
AAAACGCTGCAGCAGCAAGAGGACAGCAAGCTCGG

QTL from alignment at Pd04:11468231..11469123

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=893bp; location=Sequence derived from: Pd04:11468231..11469123 (Prunus dulcis
ATGGGTGTGCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGATGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAACCCATT
TCTTATTTGACCATTTTATCCCTACCCATTTCCTGATATGGCTCAATTCG
AACTATATTGAACAATTTTTTTCACTTGGGTTTTGCAGGCAAAGCAATAT
TTGGTGAAAAAGAATGGTACTTTTTTAGTCCGAGGGACCGGAAATACCCA
AATGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCAC
CGGCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGAATAAAAA
AAGCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAAT
TGGATTATGCACGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAG
CTCCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTG
TTTTTAAAATTGATTGTGTGATAATGATTTAATCTTTGGGTTTTTTTGTT
GTTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGA
GCTCAGCTGCGCAGAAACCCATGACGACGAGCGTTTCGAGCAAAGAGCAC
AGCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTTGACGACGTGCTCGA
GTGGCTCCCGGAGATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACT
CGCTCAAAACGCTGCAGCAGCAGCAGGAGGACAGTAAGCTCGG

QTL from alignment at Pp04:12999678..13000569

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=892bp; location=Sequence derived from: Pp04:12999678..13000569 (Prunus persica
ATGGGTGTGCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAAACCATT
TCTTATTTGACTATTTTATCCCTACCCATTTCCTGATATGGCTCAATTTG
AACTATATTGAACAATTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTCTTTAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGAATAAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCATGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAGCT
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTGTT
TTTTAAAATTGATTGTGTGATAATGATTTAATCTTTGGGTTTTTTTGTTG
TTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAG
CTCAGCTGCGCAGAAACCCATGACGACGAGCGTTTCGAGCAAAGAGCACA
GCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTTGACGACGTGCTCGAG
TGGCTCCCGGATATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACTC
GCTCAAAACGCTGCAGCAGCAGCAGGAGGACAGCAAGCTCGG

QTL from alignment at Pp04:11622460..11623351

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=892bp; location=Sequence derived from: Pp04:11622460..11623351 (Prunus persica
ATGGGTGTGCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAAACCATT
TCTTATTTGACTATTTTATCCCTACCCATTTCCTGATATGGCTCAATTTG
AACTATATTGAACAATTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTCTTTAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGAATAAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCATGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAGCT
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTGTT
TTTTAAAATTGATTGTGTGATAATGATTTAATCTTTGGGTTTTTTTGTTG
TTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAG
CTCAGCTGCGCAGAAACCCATGACGACGAGCGTTTCGAGCAAAGAGCACA
GCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTTGACGACGTGCTCGAG
TGGCTCCCGGATATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACTC
GCTCAAAACGCTGCAGCAGCAGCAGGAGGACAGCAAGCTCGG

QTL from alignment at chr4:12837363..12838254

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=892bp; location=Sequence derived from: chr4:12837363..12838254 (Prunus armeniaca
ATGGGTGTGCCAGAAACTGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTGGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTCTACCAAGTAAGAGCCAAAAATCCAT
TTCTTATTTGACTATTTTATCCCTGCCCATTTTTTGATATGGCTCAATTC
GAACTATATTGAACAATTTTTCACTTGGGTTTTGCAGGCAAAGCAATATT
TGGTGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCAA
ATGGGTCACGACCTAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCACC
GGCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGGATAAAAAA
AGCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATT
GGATTATGCACGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAGC
TCCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTATT
TATTTAAATTGATTGTGTGATAATGGTTTAATCTTTGGGTTTTTCTGTTG
TTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAG
CTCAGCTGCGCAGAAGCCCATGACGACGAGTGTTTCGAGCATAGAGCACA
GCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTGGACGACGTGCTCGAG
TGGCTGCCGGAGATTGACGACCGCTCCTTCTCTCTGCCGCGCATAAACTC
GCTCAAAACCCTGCAGCAGCAGCAGGAGGACAGCAAGCTCGG

QTL from alignment at Chr04-F0:12923714..12924605

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=892bp; location=Sequence derived from: Chr04-F0:12923714..12924605 (Prunus dulcis
ATGGGTGTGCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGATGAAGAGCTTCTGGTTCAGTATCTGTGCC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAACCCATT
TCTTATTTGACCATTTTATCCCTACCCATTTCCTGATATGGCTCAATTCG
AACTATATTGAACAATTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTTTTTAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAAGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGAATAAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCACGAGTATCGTCTAATCGAACCTTCACGCAAAAATGGCAGCT
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTTGT
TTTTAAAATTGATTGTGTGATAATGATTTAATCTTTGGGTTTTTTTGTTG
TTGCAGTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAG
CTCAGCTGCGCAGAAACCCATGACGACGAGCGTTTCGAGCAAAGAGCACA
GCAACGGCTCGTCGTCTTCCTGCTCGTCTCAGCTTGACGACGTGCTCGAG
TGGCTCCCGGAGATTGACGACCGCTGCTTCACTCTGCCACGCATAAACTC
GCTCAAAACGCTGCAGCAGCAGCAGGAGGACAGTAAGCTCGG

QTL from alignment at PAV04_REGINA:14259517..14260400

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qRPT.VV-Ch4-2012 ID=qRPT.VV-Ch4-2012; Name=fruit ripe 100%; organism=Prunus persica; type=QTL; length=884bp; location=Sequence derived from: PAV04_REGINA:14259517..14260400 (Prunus avium
ATGGGTGTCCCAGAAACCGACCCACTTTCTCAGCTAAGCTTGCCACCGGG
GTTTCGATTCTATCCCACAGACGAAGAGCTTCTGGTTCAATATCTGTGTC
GCAAGGTTGCTGGGTACCAATTCAGTCTGCAAATTATAGCTGAAATTGAT
CTCTACAAGTTCGATCCATGGGTTTTACCAAGTAAGAGCCAAAACCCATT
TCTTATTTGACTATTTTATCCCTACCCATTTTTTGATATGGCTCAATTCG
AACTATATTGAACAGTTTTTCACTTGGGTTTTGCAGGCAAAGCAATATTT
GGTGAAAAAGAATGGTACTTTTTCAGTCCGAGGGACCGGAAATACCCAAA
TGGGTCACGACCCAACAGGGTAGCCGGGTCTGGGTACTGGAAGGCCACCG
GCACTGATAAGATCATCACCACTGAAGGTCGAAAAGTTGGGATTAAAAAA
GCTCTGGTTTTCTATGTCGGCAAAGCCCCCAAAGGCACCAAGACCAATTG
GATTATGCACGAGTATCGCCTAATCGAACCTTCACGCAAAAATGGCAGCA
CCAAGGTACTTAATTTTATCGAATTTATATTCTCCCCTGTTTTTTTTTAT
AAATTGATTGTGTGATAATGGTTTAATCTTTGGGTTTTTTGGTTGTTGCA
GTTGGATGAATGGGTTTTGTGTCGTATTTACAAGAAGAGCTCGAGCTCAG
CTGCGCAGAAGCCCATGACGACGAGCGTTTCGAGCAAAGAGCACAGCAAC
GGCTCGTCGTCTTCCTGCTCATCTCAGCTGGACGACGTGCTCGAGTGGCT
GCCGGAGATTGACGACCGCTGCTTCACTCTGCCGCGCATAAACTCGCTCA
AAACGCTGCAGCAGCAAGAGGACAGCAAGCTCGG