RosCOS2378-113_snp_sweet_cherry_Pp5_16803595, RosCOS2378-113_snp_sweet_cherry_Pp5_16803595 (genetic_marker) Prunus avium

Marker Overview

Name

RosCOS2378-113_snp_sweet_cherry_Pp5_16803595

dbSNP ID

SNP Array ID

IRSC 6K SNP array for cherry:

RosCOS2378-113_snp_sweet_cherry_Pp5_16803595

Type

SNP

SNP Alleles

A/G

Species

Polymorphism

Publication

Associated With

Libraries


Library Name	Type
IRSC 6K SNP array for cherry	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold_5	supercontig	scaffold_5:16803595..16803595 .	Prunus persica Whole Genome v1.0 Assembly & Annotation	n/a
Pp05	chromosome	Pp05:16798424..16798424 .	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01
Alignment of IRSC 6K SNP array for cherry to Peach Genome v2.0.a1	2016-11-21

Publications


Year	Publication
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Sweet Cherry-RG-F1-2015	G5	N/A	54.69	R2378-113_5_16803595	View
2	Prunus-TE-6K cherry SNP-estimate	5	N/A	44.54	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
3	sweet cherry-consensus-map-2012-6K cherry SNP-estimate	5	N/A	76.38	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
4	Sweet Cherry-RosBREED-1.6K-2019	5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
5	Sweet Cherry-RosBREED-3.8K-2020	5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
6	Sweet Cherry-S-F1	5	N/A	59.26	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
7	Sweet Cherry-AxS-F1	5	N/A	73.88	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
8	Sweet_Cherry-Crump-panel-2022	5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
9	Sour Cherry-M172x25-F1	LG5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
10	SourCherry-Montx25-F1	LG5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
11	SourCherry-25x25-F1	LG5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
12	Sour Cherry-US-F1	LG5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
13	SourCherry-RE-F1	LG5	N/A	53.44	RosCOS2378-113_snp_sweet_cherry_Pp5_16803595	View
14	Sweet Cherry-BTK-F1-2013	LG05	N/A	62.8	ss490559261	View
15	Sweet Cherry-RL-F1-2013	LG05	N/A	53.4	ss490559261	View