RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1, RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1
50K SNP array for apple:	AX-105178509

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

AAAGTTTGCAAATCGCGTACACGTTTACCCCTAAG

3' Flanking Sequence

TTCCGAGTTCCATTTTTCGCATTTTCCAGTATCG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC009600.164	contig	MDC009600.164:15936..15936 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr10	chromosome	Chr10:37849005..37849005 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	10	N/A	11.4	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
2	Apple_HC64_F1	10	N/A	14.62	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
3	Apple_HCMO_F1	10	N/A	56.67	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
4	Apple_HGMM_Consenus	10	N/A	75.2	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
5	Apple-RosBREED-3.9K-2019	10	N/A	67.82	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
6	Apple-BB-F1	10	N/A	70.26	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
7	Apple-NC-F1	10	N/A	90.04	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
8	Apple-NCZFBB-consensus	10	N/A	91.25	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
9	Apple-ZF-F1	10	N/A	102.82	SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View
10	Apple-Honeycrisp_Consensus-F1	10	N/A	67.82	RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1	View

Sequence

>RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1 ID=RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1; Name=RosBREEDSNP_SNP_AG_32412374_Lg10_RosCOS2362_MAF50_218348_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
AAAGTTTGCAAATCGCGTACACGTTTACCCCTAAGRTTCCGAGTTCCATT
TTTCGCATTTTCCAGTATCG