RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3, RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3
50K SNP array for apple:	AX-105207209

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

CCGATACCATAGACATCACCAATCTTCACCATCTA

3' Flanking Sequence

CGTTGCGGTCACCATCACCACATTTTCCACCCGA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC010547.169	contig	MDC010547.169:6550..6550 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr03	chromosome	Chr03:26008387..26008387 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	3	N/A	46.9	RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3	View
2	Apple-M432-2013-physical-Malus-domestica	3	N/A	27149833	RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3	View
3	Pear-PH-CG-2017	LG3	N/A	112.17	RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3	View

Sequence

>RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3 ID=RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3; Name=RosBREEDSNP_SNP_CA_27149833_Lg3_01487_MAF20_MDP0000289672_exon3; organism=Malus x domestica; type=genetic_marker; length=70bp
CCGATACCATAGACATCACCAATCTTCACCATCTAMCGTTGCGGTCACCA
TCACCACATTTTCCACCCGA