RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2, RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
Aliasss475880278
rs267613223
a475880278
SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
R_33459287_L11_PA
dbSNP IDss475880278
SNP Array ID
480K SNP array for apple:RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
20K SNP array for apple:RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
50K SNP array for apple:RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2
TypeSNP
SNP AllelesT/G
Probe 1RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2.probe: TTTGATGAAGGAAATTGCAGTTGATTTTGAAAGGGCTAAGCAGTTTGAGA
5' Flanking SequenceAAAGCTTTCAGTTTGATGAAGGAAATTGCAGTTGATTTTGAAAGGGCTAAGCAGTTTGAG A
3' Flanking SequenceGGTAATTTCCTTAAAAAACAATTTAATTTAATTTAATTTTTTTGAACGAGAAGTGGTTTT A
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Relationships

The following probe feature(s) are associated with this genetic_marker:

Feature NameUnique NameSpeciesType
probeRosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2.probeMalus x domesticaprobe


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2Malus x domesticamarker_locus
RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2-54.713Malus x domesticamarker_locus


Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Sequence
>RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2 ID=RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2|Name=RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2|organism=Malus x domestica|type=genetic_marker|length=75bp
TGCAGTTGATTTTGAAAGGGCTAAGCAGTTTGAGA[G/T]GGTAATTTCC
TTAAAAAACAATTTAATTTAATTTA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-M432-201311N/A62.4RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2View
2Apple-M432-2013-physical-Malus-domestica11N/A33459287RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2View
3Apple-Honeycrisp_Consensus-F111N/A54.71RosBREEDSNP_SNP_TG_33459287_Lg11_02576_MAF50_382426_exon2View
Alignments
Feature NameTypeLocationAnalysis
MDC001733.221 contig MDC001733.221:28587..28587. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr11 chromosome Chr11:36870603..36870603+ Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr11 chromosome Chr11:36870604..36870604. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation