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Marker Overview
| Name | GDsnp00189 |
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| dbSNP ID | ss475882778 |
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| SNP Array ID | | 480K SNP array for apple: | AX-115181891 | | IRSC 9K SNP array for apple: | GDsnp00189 | | 20K SNP array for apple: | GDsnp00189 | | 50K SNP array for apple: | AX-105222262 |
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| Type | SNP |
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| SNP Alleles | A/G |
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| Probe 1 | GDsnp00189.probe: GCAGCTCCAGTTGCAACTAGTGAAACTTTGCTCTCAATTTCCTTTCGACA |
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| 5' Flanking Sequence | TTCCGGCGATTATATAAATTACACCACCGTAAAGAGGGGGAATAGGGGGAGCAGCTCCAG
TTGCAACTAGTGAAACTTTGCTCTCAATTTCCTTTCGACA
CTTTGCTCTCAATTTC
CTTTCGACA |
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| 3' Flanking Sequence | CTGAATGAGTTTTCTGATCCTGAGAAGAATGCATAGACAGATGTATTAAAATAAAAAGCG
CCAAAGAAAACGATTGTTACAGTTTATCTGGGCAGTTGGC
CTGAATGAGTTTTCTG
ATCCTGAGA |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
Nicola Harrison
Cindy F. Verdu
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Alignments
The following features are aligned
Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2010 | Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839. |
| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2012 | Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203. |
| 2012 | Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745. |
| 2016 | Harrison N, Harrison RJ, Barber-Perez N, Cascant-Lopez E, Cobo-Medina M, Lipska M, Conde-Ruíz R, Brain P, Gregory PJ, Fernández-Fernández F. A new three-locus model for rootstock-induced dwarfing in apple revealed by genetic mapping of root bark percentage. Journal of experimental botany. 2016 Jan 29; 67(6):1871-1881. |
| 2014 | Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Sequence
>GDsnp00189 ID=GDsnp00189; Name=GDsnp00189; organism=Malus x domestica; type=genetic_marker; length=201bp
TTCCGGCGATTATATAAATTACACCACCGTAAAGAGGGGGAATAGGGGGA
GCAGCTCCAGTTGCAACTAGTGAAACTTTGCTCTCAATTTCCTTTCGACA
RCTGAATGAGTTTTCTGATCCTGAGAAGAATGCATAGACAGATGTATTAA
AATAAAAAGCGCCAAAGAAAACGATTGTTACAGTTTATCTGGGCAGTTGG
C
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