RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1, RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1
50K SNP array for apple:	AX-105204103

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

ATTCATTGTCGAACTTGCAAACATTTCTCCAATTT

3' Flanking Sequence

GTTATTGGAAAGAACGATAAATCTCGCGTAACGA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC019333.315	contig	MDC019333.315:7065..7065 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr00	chromosome	Chr00:44894267..44894267 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2012	Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-PM-F1-Moonglow	1	N/A	10.68	RosBREED_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1	View
2	Apple-M432-2013	14	N/A	37.01	RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1	View
3	Apple-M432-2013-physical-Malus-domestica	14	N/A	29441767	RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1	View

Sequence

>RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1 ID=RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1; Name=RosBREEDSNP_SNP_GT_29441767_Lg14_01811_MAF20_107955_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
ATTCATTGTCGAACTTGCAAACATTTCTCCAATTTKGTTATTGGAAAGAA
CGATAAATCTCGCGTAACGA