RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1, RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1
50K SNP array for apple:	AX-105197949

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

AAGGTTATAGATGTCTTGACATGTCTACAGGAAAA

3' Flanking Sequence

TTTTTGTGTCTCGTCATGTTGTATTTGATGAAAC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC002355.175	contig	MDC002355.175:40..40 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr08	chromosome	Chr08:30330069..30330069 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr09	chromosome	Chr09:4348399..4348399 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C. Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PloS one. 2012; 7(2):e31745.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-PM-F1-Moonglow	17	N/A	5.68	RosBREED_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1	View

Sequence

>RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1 ID=RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1; Name=RosBREEDSNP_SNP_AC_33674745_Lg15_01897_MAF30_MDP0000163915_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
AAGGTTATAGATGTCTTGACATGTCTACAGGAAAAMTTTTTGTGTCTCGT
CATGTTGTATTTGATGAAAC