RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2, RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2
50K SNP array for apple:	AX-105178789

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

TGTGCTTGGATCCATGTCAATATTAGATGCATGCA

3' Flanking Sequence

ATAAATATCGAAGTCTATAATAATACGAAACAAA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC020989.438	contig	MDC020989.438:113..113 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr05	chromosome	Chr05:21708561..21708561 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr11	chromosome	Chr11:670617..670617 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr14	chromosome	Chr14:3612987..3612987 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr15	chromosome	Chr15:7723511..7723511 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	5	N/A	69	RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2	View
2	Apple-M432-2013-physical-Malus-domestica	5	N/A	24445080	RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2	View

Sequence

>RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2 ID=RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2; Name=RosBREEDSNP_SNP_CT_24445080_Lg5_AT11_MAF30_1661846_exon2; organism=Malus x domestica; type=genetic_marker; length=70bp
TGTGCTTGGATCCATGTCAATATTAGATGCATGCAYATAAATATCGAAGT
CTATAATAATACGAAACAAA