RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1, RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1 (genetic_marker) Malus x domestica

Marker Overview
NameRosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1
dbSNP IDss475877291
SNP Array ID
480K SNP array for apple:AX-105180063
IRSC 9K SNP array for apple:RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1
20K SNP array for apple:RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1
50K SNP array for apple:AX-105180063
TypeSNP
SNP AllelesA/G
Probe 1RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1.probe: TTGGATTTAGGCCCAAGCATGCTATGCGTCTACATTGTGACAAGATGGCT
5' Flanking SequenceACTGAGAGATTTTGGATTTAGGCCCAAGCATGCTATGCGTCTACATTGTGACAAGATGGC T
3' Flanking SequenceCAATTGATATTGCTCACAATCCAGTTCAACATGATCGAACCAAACATGTGGAGGTGGATA G
SpeciesMalus x domestica
Publication[view all]
ContactMichela Troggio
Contact
NameDetails
Michela Troggio
First name:Michela
Last name:Troggio
Title:Researcher
Institution:Research and Innovation Centre, Fondazione Edmund Mach
Address:Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:Italy
Email:ti.hcamf@oiggort.alehcim
Phone:+39 0461 615111
Fax:+39 0461 650218
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Pear-PM-F1-Moonglow15N/A25.6RosBREED_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1View
2Apple-Honeycrisp_Consensus-F12N/A41.08RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1View
3Pear-PH-CG-2017LG15N/A83.94RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1View
Sequence
>RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1 ID=RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1; Name=RosBREEDSNP_SNP_AG_23078001_Lg2_RosCOS292_MAF50_MDP0000407787_exon1; organism=Malus x domestica; type=genetic_marker; length=75bp
AGCATGCTATGCGTCTACATTGTGACAAGATGGCT[A/G]CAATTGATAT
TGCTCACAATCCAGTTCAACATGAT
Alignments
Feature NameTypeLocationAnalysis
MDC001893.279 contig MDC001893.279:1359..1359. Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr02 chromosome Chr02:18454060..18454060- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Chr02 chromosome Chr02:18454062..18454062. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation