RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2, RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2
50K SNP array for apple:	AX-105209447

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

ATTACCTCATCCATGTGGCAAACACTGCATTTATC

3' Flanking Sequence

AGGTCCTTCCAGTCCACACGAACAGGTCTGTAACC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC011935.215	contig	MDC011935.215:13230..13230 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr13	chromosome	Chr13:39196652..39196652 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple_HCGA_F1	13	N/A	3.31	SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2	View
2	Apple_HC64_F1	13	N/A	0	SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2	View
3	Apple_HCMO_F1	13	N/A	66.34	SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2	View
4	Apple_HGMM_Consenus	13	N/A	94.29	SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2	View
5	Apple-Honeycrisp_Consensus-F1	13	N/A	60.44	RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2	View

Sequence

>RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2 ID=RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2; Name=RosBREEDSNP_SNP_AG_23469119_Lg2_RosCOS2680_MAF30_137329_exon2; organism=Malus x domestica; type=genetic_marker; length=71bp
ATTACCTCATCCATGTGGCAAACACTGCATTTATCRAGGTCCTTCCAGTC
CACACGAACAGGTCTGTAACC