RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1, RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1
50K SNP array for apple:	AX-105176952

Type

SNP

SNP Alleles

T/G

5' Flanking Sequence

TGTGGCTCTAGTGTGAGGAGACAGCCACTTGGCCC

3' Flanking Sequence

GATGTACTCGGCTTTTCTCCACGGCGGAACTGGC

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC009355.253	contig	MDC009355.253:5566..5566 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr11	chromosome	Chr11:39378679..39378679 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2013	Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-M432-2013	11	N/A	70.2	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View
2	Apple-M432-2013-physical-Malus-domestica	11	N/A	35936616	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View
3	Apple-NC-F1	11	N/A	84.03	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View
4	Apple-NCZFBB-consensus	11	N/A	61.01	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View
5	Apple-ZF-F1	11	N/A	81.21	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View
6	Apple-Honeycrisp_Consensus-F1	11	N/A	59.09	RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1	View

Sequence

>RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1 ID=RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1; Name=RosBREEDSNP_SNP_TG_35936616_Lg11_RosCOS372_MAF50_826662_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
TGTGGCTCTAGTGTGAGGAGACAGCCACTTGGCCCKGATGTACTCGGCTT
TTCTCCACGGCGGAACTGGC