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Marker Overview
| Name | RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16 |
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| dbSNP ID | ss475878468 |
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| SNP Array ID | | 480K SNP array for apple: | AX-105199354 | | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16 | | 20K SNP array for apple: | RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16 | | 50K SNP array for apple: | AX-105199354 |
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| Type | SNP |
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| SNP Alleles | T/G |
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| Probe 1 | RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16.probe: TGAGCTTAACTTGGCTCCGTCTGATGTGCTGGAAGCATTGAACAGATTAC |
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| 5' Flanking Sequence | ATAGTTCTGGATGAGCTTAACTTGGCTCCGTCTGATGTGCTGGAAGCATTGAACAGATTA
C |
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| 3' Flanking Sequence | GGATGATAATAGAGAGCTTTTCGTGCCTGAATTGCAGGAAACCATTCATGCACATAAAAA
C |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2013 | Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407. |
| 2020 | Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8 |
Sequence
>RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16 ID=RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16; Name=RosBREEDSNP_SNP_TG_36495464_Lg5_00100_MAF30_MDP0000217948_exon16; organism=Malus x domestica; type=genetic_marker; length=75bp
TCCGTCTGATGTGCTGGAAGCATTGAACAGATTAC[G/T]GGATGATAAT
AGAGAGCTTTTCGTGCCTGAATTGC
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