CMT3A, JX575802.1-CMT3A.m1 (mRNA) Malus x domestica

Transcript Overview
NameCMT3A
Unique NameJX575802.1-CMT3A.m1
TypemRNA
OrganismMalus x domestica (Apple)
Sourcegenbank
ProductCMT-type cytosine DNA-methyltransferase 3a
Genbank NoteMdCMT3a
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
JX575802regionJX575802:1..1119 +NCBI Rosaceae gene and mRNA sequencesn/a
Chr11chromosomeChr11:1081296..1084926 -Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotationn/a
chr15chromosomeCMT3A:1..1119 .
chr15:27649328..27652956 -		n/a
chr15chromosomeCMT3A:1..1119 .
chr15:31331434..31335062 +		n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JX575802.1-CMT3A.m1-cds1JX575802.1-CMT3A.m1-cds1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CMT3AJX575802.1-CMT3A.p1Malus x domesticapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI411012957
nuccoreJX575802.1
Sequences
The following sequences are available for this feature:

mRNA sequence

>JX575802.1-CMT3A.m1 ID=JX575802.1-CMT3A.m1; Name=CMT3A; organism=Malus x domestica; type=mRNA; length=1119bp
atgcaaacaaaaatagagccaaacagatcgaaaagtcatccccgatacca
gacatccccaaagtccttacgctccaaaaccaaacagaatcccaatccaa
tcactcgcgcactgaaaaacccctatcgcccatctctctctctctctctc
tgttctccgccgaagtcgaagaacccaaggcaaaccaagaatgtggaaaa
atctgcttctccgccgaaatcgaagaatccgaggcaaaccaatgaggcga
gagttgaagaggaggtagcaacgagtgtagaaaaagctgcttctctgccg
aggaagccagtgactcaggaggtagctgcggctgatgaagacggagagga
atcgaggtttagtggcaaaccgatggaagatgaggagactcgtaagcaat
atcccaagagatatgtgggagagaattatgcattgctagcaatcagttgt
gagtgttctatgtatttcactgggtcacgaaaagaaaggaagaaatgtta
tgaaaggacaattacaaagagtatcgccctttgttttgactttgatcctt
gcattggtgcagaaggcaaagaggaatgggcaaaaaaactccaacgagga
gagacaaaagaaccctacatttgtaagattgtggaaatgtttgaggcaat
tggtgggctattatattttactgcacaatggtactatagatcacaagaca
ctgtcataaagcactgtgctagtgttgcttgtgggcatgttgatcaagat
gtgaagagtaaatcaattccagtgtgcaattactattgcgacaccaagta
tttgctaccgtattctacttttgtcaatctgcaaacaggatattgttctc
tttctacttactgtcatgatgctgaaattatgcagtctggaagtgatgac
tcaactatctctgtttcggatgatgtttgtttggatagtgaggttgattc
aaagctgtcaaatggagtgtgtgccaaatcacaagtaaggctcctggacc
tatattctggttgtggagtgatgtctactggcctgtgccttgctgcccat
ttggccaatgtcaatcttgtaacgttgagagaaactgtttcaattgattg
caatgcaatgctgttgtaa
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protein sequence of CMT3A

>JX575802.1-CMT3A.p1 ID=JX575802.1-CMT3A.p1; Name=CMT3A; organism=Malus x domestica; type=polypeptide; length=372bp
MQTKIEPNRSKSHPRYQTSPKSLRSKTKQNPNPITRALKNPYRPSLSLSL
CSPPKSKNPRQTKNVEKSASPPKSKNPRQTNEARVEEEVATSVEKAASLP
RKPVTQEVAAADEDGEESRFSGKPMEDEETRKQYPKRYVGENYALLAISC
ECSMYFTGSRKERKKCYERTITKSIALCFDFDPCIGAEGKEEWAKKLQRG
ETKEPYICKIVEMFEAIGGLLYFTAQWYYRSQDTVIKHCASVACGHVDQD
VKSKSIPVCNYYCDTKYLLPYSTFVNLQTGYCSLSTYCHDAEIMQSGSDD
STISVSDDVCLDSEVDSKLSNGVCAKSQVRLLDLYSGCGVMSTGLCLAAH
LANVNLVTLRETVSIDCNAMLL
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mRNA from alignment at JX575802:1..1119+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>JX575802.1-CMT3A.m1 ID=JX575802.1-CMT3A.m1; Name=CMT3A; organism=Malus x domestica; type=mRNA; length=1119bp; location=Sequence derived from: JX575802:1..1119+ (Malus x domestica
atgcaaacaaaaatagagccaaacagatcgaaaagtcatccccgatacca
gacatccccaaagtccttacgctccaaaaccaaacagaatcccaatccaa
tcactcgcgcactgaaaaacccctatcgcccatctctctctctctctctc
tgttctccgccgaagtcgaagaacccaaggcaaaccaagaatgtggaaaa
atctgcttctccgccgaaatcgaagaatccgaggcaaaccaatgaggcga
gagttgaagaggaggtagcaacgagtgtagaaaaagctgcttctctgccg
aggaagccagtgactcaggaggtagctgcggctgatgaagacggagagga
atcgaggtttagtggcaaaccgatggaagatgaggagactcgtaagcaat
atcccaagagatatgtgggagagaattatgcattgctagcaatcagttgt
gagtgttctatgtatttcactgggtcacgaaaagaaaggaagaaatgtta
tgaaaggacaattacaaagagtatcgccctttgttttgactttgatcctt
gcattggtgcagaaggcaaagaggaatgggcaaaaaaactccaacgagga
gagacaaaagaaccctacatttgtaagattgtggaaatgtttgaggcaat
tggtgggctattatattttactgcacaatggtactatagatcacaagaca
ctgtcataaagcactgtgctagtgttgcttgtgggcatgttgatcaagat
gtgaagagtaaatcaattccagtgtgcaattactattgcgacaccaagta
tttgctaccgtattctacttttgtcaatctgcaaacaggatattgttctc
tttctacttactgtcatgatgctgaaattatgcagtctggaagtgatgac
tcaactatctctgtttcggatgatgtttgtttggatagtgaggttgattc
aaagctgtcaaatggagtgtgtgccaaatcacaagtaaggctcctggacc
tatattctggttgtggagtgatgtctactggcctgtgccttgctgcccat
ttggccaatgtcaatcttgtaacgttgagagaaactgtttcaattgattg
caatgcaatgctgttgtaa
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Coding sequence (CDS) from alignment at JX575802:1..1119+

>JX575802.1-CMT3A.m1 ID=JX575802.1-CMT3A.m1; Name=CMT3A; organism=Malus x domestica; type=CDS; length=1119bp; location=Sequence derived from: JX575802:1..1119+ (Malus x domestica
atgcaaacaaaaatagagccaaacagatcgaaaagtcatccccgatacca
gacatccccaaagtccttacgctccaaaaccaaacagaatcccaatccaa
tcactcgcgcactgaaaaacccctatcgcccatctctctctctctctctc
tgttctccgccgaagtcgaagaacccaaggcaaaccaagaatgtggaaaa
atctgcttctccgccgaaatcgaagaatccgaggcaaaccaatgaggcga
gagttgaagaggaggtagcaacgagtgtagaaaaagctgcttctctgccg
aggaagccagtgactcaggaggtagctgcggctgatgaagacggagagga
atcgaggtttagtggcaaaccgatggaagatgaggagactcgtaagcaat
atcccaagagatatgtgggagagaattatgcattgctagcaatcagttgt
gagtgttctatgtatttcactgggtcacgaaaagaaaggaagaaatgtta
tgaaaggacaattacaaagagtatcgccctttgttttgactttgatcctt
gcattggtgcagaaggcaaagaggaatgggcaaaaaaactccaacgagga
gagacaaaagaaccctacatttgtaagattgtggaaatgtttgaggcaat
tggtgggctattatattttactgcacaatggtactatagatcacaagaca
ctgtcataaagcactgtgctagtgttgcttgtgggcatgttgatcaagat
gtgaagagtaaatcaattccagtgtgcaattactattgcgacaccaagta
tttgctaccgtattctacttttgtcaatctgcaaacaggatattgttctc
tttctacttactgtcatgatgctgaaattatgcagtctggaagtgatgac
tcaactatctctgtttcggatgatgtttgtttggatagtgaggttgattc
aaagctgtcaaatggagtgtgtgccaaatcacaagtaaggctcctggacc
tatattctggttgtggagtgatgtctactggcctgtgccttgctgcccat
ttggccaatgtcaatcttgtaacgttgagagaaactgtttcaattgattg
caatgcaatgctgttgtaa
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