MS06c09, MS06c09 (genetic_marker) Malus x domestica

Marker Overview
NameMS06c09
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Primer 1MS06c09.F: ACTATTGGAGTAAGTCGA
Primer 2MS06c09.R: AATATAAGAGCCAGAGGC
Product Length102–118
Max Length150 bp
Publication[view all]
ContactC. Gessler
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Publications
YearPublication
2004Yamamoto T, Kimura T, Saito T, Kotobuki K, Matsuta N, Liebhard R, Gessler C, Weg W.E. van de, Hayashi, T. Genetic linkage maps of Japanese and European pears aligned to the apple consensus map. Acta Horticulturae. 2004; 663:51-56.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2012Schouten HJ, van de Weg WE, Carling J, Khan SI, McKay SJ, van Kaauwen MPW, Wittenberg AHJ, Koehorst-van Putten HJJ, Noordijk Y, Gao Z, Rees DJG, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A. Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Molecular breeding 2012 29:645–660
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple Integrated map7N/A38.4MS06c09View
2Pear-BH-F1Ba4N/A11.7MS06c09View
3Apple-C16xC17-F1-20127N/A50.61MS06c09View
4Pear-PM-F1-PEAR37N/A43.67MS06c09View
5Pear-PM-F1-Moonglow7N/A39.92MS06c09View
6Apple-PF-F1-2012ch7N/A35MS06c09View
7Apple-RGTxGD-F1-2015RGT_7N/A28.9MS06c09View
8Apple-RGTxGD-F1-2015GD_7N/A54.52MS06c09View
9Apple-DP-F1-2013D7N/A55.6MS06c09View
10Apple-DP-F1-2013P7N/A59MS06c09View
11Pear-Bartlett-F1-2007Ba7N/A14.2MS06c09View
12Pear-Ba-F1-2013Ba7N/A42.2MS06c09View
13Pear-integrated_consensus_map-IPCG-2017LG7N/A60.44MS06c09View
Alignments
Feature NameTypeLocationAnalysis
Chr07 chromosome Chr07:25415116..25415231. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr7A chromosome chr7A:24675117..24675232. Malus x domestica ‘Honeycrisp’ Genome v1.1.a1 Assembly & Annotation