|
Marker Overview
Name | s1_41520481 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s1_41520481 |
|
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | GATGCATGAGAATCCTCATAACAAAAAAGAAGAGAGAAATCAATAAGTTTATAATTAAGT
TCTAAGGAGACAATTACTGCAGCCAAGGGCCACCATGAGATTGCCTAATTTGAAAGCCCT
ATTGGGTTCATTGCTGCTCTTTCTTCTAGC |
3' Flanking Sequence | GTATTTCCCGACCATGCCATTGCCCACCATAGGCCAAGGTTCACTGCTGGCCCTTGGAAG
CAATCTCATGCCACATTCTATGAAGGAGGCTCCGGAACATTTGGTACGAAATTCTAAACA
ACGTTGTTTTGAACACAAGAGCACTATATT |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
|
Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s1_41520481 ID=s1_41520481; Name=s1_41520481; organism=Prunus avium; type=genetic_marker; length=301bp GATGCATGAGAATCCTCATAACAAAAAAGAAGAGAGAAATCAATAAGTTT ATAATTAAGTTCTAAGGAGACAATTACTGCAGCCAAGGGCCACCATGAGA TTGCCTAATTTGAAAGCCCTATTGGGTTCATTGCTGCTCTTTCTTCTAGC RGTATTTCCCGACCATGCCATTGCCCACCATAGGCCAAGGTTCACTGCTG GCCCTTGGAAGCAATCTCATGCCACATTCTATGAAGGAGGCTCCGGAACA TTTGGTACGAAATTCTAAACAACGTTGTTTTGAACACAAGAGCACTATAT T
|