Sciros | GDR

Germplasm Overview


Name	Sciros
Alias	Pacific Rose [view all 2]
GRIN ID	N/A
Type	Cultivar
Species	Malus x domestica
Description	N/A
Origin Country	N/A
Origin Detail	N/A
Pedigree	Gala x Splendour
Maternal Parent	Gala
Paternal Parent	Splendour
Maternal Parent of	WSU101 [view all 36]
Paternal Parent of	WSU79 [view all 6]
Phenotypic Data	[view all 836]
SSR Genotype Data	[view all 14]
SNP Genotype Data	[view all 3855]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	Chagné D, Kirk C, How N, Whitworth C, Fontic C, Reig G, Sawyer G, Rouse S, Poles L, Gardiner SE, Kumar S, Espley R, Volz RK, Troggio M, Iglesias I. A functional genetic marker for apple red skin coloration across different environments. Tree Genetics & Genomes . 2016; 12:67.

Alias


Synonym
Pacific Rose
Pacrose

Qtl

Total 7 records


#	Name	Dataset
1	qFRCL.RG-LG9.2016	Apple-red_skin_coloration-Chagne-2016
2	qFRCL.NZST51-LG9.2016.1	Apple-red_skin_coloration-Chagne-2016
3	qFRCL.F-LG9.2016	Apple-red_skin_coloration-Chagne-2016
4	qFRCL.NZST51-LG9.2016.2	Apple-red_skin_coloration-Chagne-2016
5	qFRCL.S-LG9.2016	Apple-red_skin_coloration-Chagne-2016
6	qFRCL.PA153-LG9.2016	Apple-red_skin_coloration-Chagne-2016
7	qFRCL.NZST51-LG9.2016.3	Apple-red_skin_coloration-Chagne-2016

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Ssr Genotype Data

Total 14 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Apple_KE_genotyping_SSR_2010	ACO1	genetic_marker	1\|2	ACO1_1; ACO1_2
2	Apple_KE_genotyping_SSR_2010	ACS1	genetic_marker	2\|2	ACS1_2; ACS1_2
3	Apple_KE_genotyping_SSR_2010	CH02b03	genetic_marker	107\|79	CH02b03_107; CH02b03_79
4	Apple_KE_genotyping_SSR_2010	CH05c06	genetic_marker	104\|118	CH05c06_104; CH05c06_118
5	Apple_KE_genotyping_SSR_2010	Hi01b01	genetic_marker	162\|189	Hi01b01_162; Hi01b01_189
6	Apple_KE_genotyping_SSR_2010	Hi04e04	genetic_marker	246\|246	Hi04e04_246; Hi04e04_246
7	Apple_KE_genotyping_SSR_2010	Hi22d06	genetic_marker	129\|132	Hi22d06_129; Hi22d06_132
8	Apple_KE_genotyping_SSR_2010	Md-Exp2	genetic_marker	295\|450	Md-Exp2_295; Md-Exp2_450
9	Apple_KE_genotyping_SSR_2010	Md-Exp7	genetic_marker	202\|202	Md-Exp7_202; Md-Exp7_202
10	Apple_KE_genotyping_SSR_2010	Md-PG1-ssr	genetic_marker	169\|188	Md-PG1-ssr_169; Md-PG1-ssr_188
11	Apple_KE_genotyping_SSR_2010	Md-PG2	genetic_marker	359\|363	Md-PG2_359; Md-PG2_363
12	Apple_CRS_genotyping_SSR_2010	CH05c06	genetic_marker	104\|118	CH05c06_104; CH05c06_118
13	Apple_CRS_genotyping_SSR_2010	Hi04e04	genetic_marker	246\|246	Hi04e04_246; Hi04e04_246
14	Apple_CRS_genotyping_SSR_2010	Md-Exp7	genetic_marker	202\|202	Md-Exp7_202; Md-Exp7_202

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Publications


Year	Publication
2016	Chagné D, Kirk C, How N, Whitworth C, Fontic C, Reig G, Sawyer G, Rouse S, Poles L, Gardiner SE, Kumar S, Espley R, Volz RK, Troggio M, Iglesias I. A functional genetic marker for apple red skin coloration across different environments. Tree Genetics & Genomes . 2016; 12:67.

Snp Genotype Data

Total 3,855 records

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#	Dataset	Marker Name	Allele	Genotype
1	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6073277_Lg16_01003_MAF20_1657101_exon8	A/C	A\|A
2	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6171256_Lg7_01988_MAF40_1675433_exon2	T/G	A\|A
3	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6306433_Lg13_226059_MAF30_226059_exon2	A/C	A\|A
4	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6451261_Lg13_65890_MAF20_65890_exon1	A/C	A\|A
5	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6540945_Lg16_01866_MAF40_1623887_exon4	A/C	A\|A
6	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6548475_Lg15_00076_MAF40_1672512_exon1	A/C	A\|B
7	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6615652_Lg6_RosCOS1869_MAF40_1618698_exon6	A/C	B\|B
8	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6637190_Lg15_MDP0000156137_MAF30_MDP0000156137_exon1	M	A\|A
9	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6637447_Lg15_MDP0000156137_MAF20_MDP0000156137_exon1	A/C	A\|B
10	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6731200_Lg2_01549_MAF20_MDP0000135135_exon12	A/C	A\|A
11	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_693011_Lg3_RosCOS2149_MAF50_30133_exon2	A/C	A\|A
12	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_6944236_Lg17_01927_MAF10_888734_exon1	A/C	A\|B
13	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_7085646_Lg5_01151_MAF30_1655896_exon1	A/C	A\|A
14	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_7144285_Lg13_00128_MAF30_MDP0000846055_exon4	A/C	A\|A
15	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_7189032_Lg11_01483_MAF50_MDP0000126036_exon13	A/C	B\|B
16	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_7424678_Lg16_RosCOS1166_MAF20_812638_exon1	A/C	A\|A
17	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_7598269_Lg13_02124_MAF30_1659946_exon1	A/C	A\|A
18	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_823910_Lg4_01597_MAF20_523412_exon1	A/C	A\|A
19	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_8273556_Lg9_00337_MAF20_374425_exon1	A/C	A\|B
20	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_8376800_Lg5_01208_MAF50_1636248_exon2	A/C	A\|A
21	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_8493130_Lg7_01780_MAF10_439501_exon1	M	A\|A
22	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_8520200_Lg7_01780_MAF30_525134_exon4	M	A\|A
23	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_8789324_Lg1_02428_MAF30_21164_exon1	T/G	A\|A
24	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_9692039_Lg8_RosCOS2185_MAF30_1626719_exon8	A/C	A\|A
25	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AG_10009408_Lg16_00879_MAF50_487493_exon1	A/G	A\|A

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Cross References

External references for this accession


Database	Accession
Fruit and Nut Cultivars Database	12228

Maternal Parent Of

Germplasm Name	Description	Type
WSU101		accession
WSU47		accession
WSU51		accession
WSU53		accession
WSU56		accession
WSU78		accession
WSU81		accession
WSU82		accession
WSU85		accession
WSU86		accession
WSU87		accession
WSU91		accession
WSU92		accession
WSU98		accession
WSU99		accession
15A-51-0109		accession
4-27-0019		accession
5-87-0019		accession
5-90-0019		accession
6-73-0019		accession
CV12-32B-11-0109		accession
CV12-32B-128-0217		accession
CV12-32B-18-0109		accession
CV12-33B-103-0109		accession
CV12-33B-108-0109		accession
CV12-33B-109-0109		accession
CV12-33B-11-0109		accession
CV12-33B-121-0109		accession
CV12-33B-139-0109		accession
CV12-33B-22-0109		accession
CV12-33B-26-0109		accession
CV12-33B-33-0109		accession
CV12-33B-57-0109		accession
CV12-34B-10-0109		accession
CV12-34B-37-0109		accession
CV12-35B-25-0109		accession

Phenotypic Data

Total 836 trait scores

Download Table

#	Dataset	Descriptor	Value
1	Apple_KE_phenotyping_2010	APPLE_KE_TART	3
2	Apple_KE_phenotyping_2010	APPLE_KE_TYPECOL	1
3	Apple_KE_phenotyping_2010	APPLE_KE_TYPECOL	1
4	Apple_KE_phenotyping_2012	APPLE_KE_A1_lb	9.61299999999999955
5	Apple_KE_phenotyping_2012	APPLE_KE_A2_lb	15.782
6	Apple_KE_phenotyping_2012	APPLE_KE_APP_SUM	3.7
7	Apple_KE_phenotyping_2012	APPLE_KE_AROM	3
8	Apple_KE_phenotyping_2012	APPLE_KE_BRIX	15.04
9	Apple_KE_phenotyping_2012	APPLE_KE_C0_in	0.0100
10	Apple_KE_phenotyping_2012	APPLE_KE_Cn	163.979000000000013
11	Apple_KE_phenotyping_2012	APPLE_KE_%COL	5
12	Apple_KE_phenotyping_2012	APPLE_KE_COMM	n&b-rejected b-not crisp great aroma n-bit bitter l-very tasty needs more acid k-slight red del flavor
13	Apple_KE_phenotyping_2012	APPLE_KE_CRISP	3
14	Apple_KE_phenotyping_2012	APPLE_KE_E2_lb	17.7489999999999988
15	Apple_KE_phenotyping_2012	APPLE_KE_EQ	5.8
16	Apple_KE_phenotyping_2012	APPLE_KE_FRTDIAM	3.04300000000000015
17	Apple_KE_phenotyping_2012	APPLE_KE_FRTWT_G	228.610367999999994
18	Apple_KE_phenotyping_2012	APPLE_KE_FRTWT_LB	0.504000000000000004
19	Apple_KE_phenotyping_2012	APPLE_KE_GRDCOL	3
20	Apple_KE_phenotyping_2012	APPLE_KE_HARD	3
21	Apple_KE_phenotyping_2012	APPLE_KE_HUE	7.5
22	Apple_KE_phenotyping_2012	APPLE_KE_JUIC	3
23	Apple_KE_phenotyping_2012	APPLE_KE_LENT	3
24	Apple_KE_phenotyping_2012	APPLE_KE_M1_lb	14.8510000000000009
25	Apple_KE_phenotyping_2012	APPLE_KE_M1_N	66.0605152199999992

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Paternal Parent Of

Germplasm Name	Description	Type
WSU79		accession
WSU80		accession
4A-100-0013		accession
4A-38-0013		accession
CV12-4A-55-0013		accession
CV12-4A-95-0013		accession

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