Sciros | GDR

Germplasm Overview


Name	Sciros
Alias	Pacific Rose [view all 2]
GRIN ID	N/A
Type	Cultivar
Species	Malus x domestica
Description	N/A
Origin Country	N/A
Origin Detail	N/A
Pedigree	Gala x Splendour
Maternal Parent	Gala
Paternal Parent	Splendour
Maternal Parent of	WSU101 [view all 36]
Paternal Parent of	WSU79 [view all 6]
Phenotypic Data	[view all 836]
SSR Genotype Data	[view all 14]
SNP Genotype Data	[view all 3855]
Map	N/A
DNA Library	N/A
Sequence	N/A
Comments	N/A
Reference	Chagné D, Kirk C, How N, Whitworth C, Fontic C, Reig G, Sawyer G, Rouse S, Poles L, Gardiner SE, Kumar S, Espley R, Volz RK, Troggio M, Iglesias I. A functional genetic marker for apple red skin coloration across different environments. Tree Genetics & Genomes . 2016; 12:67.

Alias


Synonym
Pacific Rose
Pacrose

Qtl

Total 7 records


#	Name	Dataset
1	qFRCL.RG-LG9.2016	Apple-red_skin_coloration-Chagne-2016
2	qFRCL.NZST51-LG9.2016.1	Apple-red_skin_coloration-Chagne-2016
3	qFRCL.F-LG9.2016	Apple-red_skin_coloration-Chagne-2016
4	qFRCL.NZST51-LG9.2016.2	Apple-red_skin_coloration-Chagne-2016
5	qFRCL.S-LG9.2016	Apple-red_skin_coloration-Chagne-2016
6	qFRCL.PA153-LG9.2016	Apple-red_skin_coloration-Chagne-2016
7	qFRCL.NZST51-LG9.2016.3	Apple-red_skin_coloration-Chagne-2016

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Ssr Genotype Data

Total 14 records

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#	Dataset	Marker	Marker Type	Genotype	Marker_Allele
1	Apple_KE_genotyping_SSR_2010	ACO1	genetic_marker	1\|2	ACO1_1; ACO1_2
2	Apple_KE_genotyping_SSR_2010	ACS1	genetic_marker	2\|2	ACS1_2; ACS1_2
3	Apple_KE_genotyping_SSR_2010	CH02b03	genetic_marker	107\|79	CH02b03_107; CH02b03_79
4	Apple_KE_genotyping_SSR_2010	CH05c06	genetic_marker	104\|118	CH05c06_104; CH05c06_118
5	Apple_KE_genotyping_SSR_2010	Hi01b01	genetic_marker	162\|189	Hi01b01_162; Hi01b01_189
6	Apple_KE_genotyping_SSR_2010	Hi04e04	genetic_marker	246\|246	Hi04e04_246; Hi04e04_246
7	Apple_KE_genotyping_SSR_2010	Hi22d06	genetic_marker	129\|132	Hi22d06_129; Hi22d06_132
8	Apple_KE_genotyping_SSR_2010	Md-Exp2	genetic_marker	295\|450	Md-Exp2_295; Md-Exp2_450
9	Apple_KE_genotyping_SSR_2010	Md-Exp7	genetic_marker	202\|202	Md-Exp7_202; Md-Exp7_202
10	Apple_KE_genotyping_SSR_2010	Md-PG1-ssr	genetic_marker	169\|188	Md-PG1-ssr_169; Md-PG1-ssr_188
11	Apple_KE_genotyping_SSR_2010	Md-PG2	genetic_marker	359\|363	Md-PG2_359; Md-PG2_363
12	Apple_CRS_genotyping_SSR_2010	CH05c06	genetic_marker	104\|118	CH05c06_104; CH05c06_118
13	Apple_CRS_genotyping_SSR_2010	Hi04e04	genetic_marker	246\|246	Hi04e04_246; Hi04e04_246
14	Apple_CRS_genotyping_SSR_2010	Md-Exp7	genetic_marker	202\|202	Md-Exp7_202; Md-Exp7_202

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Publications


Year	Publication
2016	Chagné D, Kirk C, How N, Whitworth C, Fontic C, Reig G, Sawyer G, Rouse S, Poles L, Gardiner SE, Kumar S, Espley R, Volz RK, Troggio M, Iglesias I. A functional genetic marker for apple red skin coloration across different environments. Tree Genetics & Genomes . 2016; 12:67.

Snp Genotype Data

Total 3,855 records

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#	Dataset	Marker Name	Allele	Genotype
1	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_31171586_Lg3_01779_MAF10_MDP0000140206_exon6	A/C	A\|A
2	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_31285569_Lg10_01961_MAF20_MDP0000130173_exon4	M	A\|A
3	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_31320811_Lg10_01961_MAF50_MDP0000256011_exon1	A/C	A\|A
4	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_31638697_Lg12_00641_MAF30_1625990_exon1	A/C	A\|A
5	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_31644900_Lg12_00641_MAF30_MDP0000599449_exon1	M	A\|A
6	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_32163753_Lg12_00762_MAF10_736021_exon1	A/C	A\|A
7	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_32329275_Lg9_00659_MAF20_178008_exon1	T/G	A\|A
8	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_32854243_Lg2_MDP0000185319_MAF20_MDP0000185319_exon1	T/G	A\|A
9	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_33144152_Lg14_00023_MAF30_1681230_exon1	A/C	A\|B
10	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_33262034_Lg2_00629_MAF30_532453_exon1	A/C	B\|B
11	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_33321359_Lg3_01667_MAF10_MDP0000169320_exon2	A/C	-\|-
12	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_3334689_Lg16	A/C	A\|A
13	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_33501094_Lg10_01683_MAF50_MDP0000305859_exon5	T/G	A\|B
14	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_33663997_Lg15_01897_MAF20_1618900_exon1	A/C	A\|A
15	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34035401_Lg2_RosCOS1019_MAF20_MDP0000184243_exon2	A/C	A\|A
16	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34180511_Lg2_RosCOS2050_MAF30_342651_exon3	A/C	A\|B
17	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34225113_Lg2_00624_MAF40_1624980_exon2	A/C	A\|B
18	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34431436_Lg3_02030_MAF20_MDP0000155220_exon12	T/G	A\|A
19	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34510440_Lg1_02371_MAF50_1642607_exon7	T/G	A\|B
20	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_34809522_Lg12_01874_MAF30_355036_exon2	T/G	A\|A
21	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_3543417_Lg9_325712_MAF30_325712_exon2	A/C	A\|B
22	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_35840087_Lg11_00795_MAF30_1638089_exon2	A/C	A\|B
23	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_35859098_Lg11_00795_MAF40_MDP0000126702_exon6	T/G	A\|B
24	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_36853428_Lg10_00405_MAF40_MDP0000909472_exon3	A/C	A\|B
25	RosBREED_Apple_CRS_SNP_Genotype_2020	RosBREEDSNP_SNP_AC_37675108_Lg11_MDP0000258603_MAF10_MDP0000258603_exon20	A/C	A\|A

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Cross References

External references for this accession


Database	Accession
Fruit and Nut Cultivars Database	12228

Maternal Parent Of

Germplasm Name	Description	Type
WSU101		accession
WSU47		accession
WSU51		accession
WSU53		accession
WSU56		accession
WSU78		accession
WSU81		accession
WSU82		accession
WSU85		accession
WSU86		accession
WSU87		accession
WSU91		accession
WSU92		accession
WSU98		accession
WSU99		accession
15A-51-0109		accession
4-27-0019		accession
5-87-0019		accession
5-90-0019		accession
6-73-0019		accession
CV12-32B-11-0109		accession
CV12-32B-128-0217		accession
CV12-32B-18-0109		accession
CV12-33B-103-0109		accession
CV12-33B-108-0109		accession
CV12-33B-109-0109		accession
CV12-33B-11-0109		accession
CV12-33B-121-0109		accession
CV12-33B-139-0109		accession
CV12-33B-22-0109		accession
CV12-33B-26-0109		accession
CV12-33B-33-0109		accession
CV12-33B-57-0109		accession
CV12-34B-10-0109		accession
CV12-34B-37-0109		accession
CV12-35B-25-0109		accession

Phenotypic Data

Total 836 trait scores

Download Table

#	Dataset	Descriptor	Value
1	Apple_KE_phenotyping_2010	APPLE_KE_Cn	274.531999999999982
2	Apple_KE_phenotyping_2010	APPLE_KE_%COL	4.5
3	Apple_KE_phenotyping_2010	APPLE_KE_%COL	5
4	Apple_KE_phenotyping_2010	APPLE_KE_COMM	l&b-liked n-variable size b-large one good but bland browning
5	Apple_KE_phenotyping_2010	APPLE_KE_COMM	n-square b-bland no browning
6	Apple_KE_phenotyping_2010	APPLE_KE_CRISP	3
7	Apple_KE_phenotyping_2010	APPLE_KE_CRISP	3.5
8	Apple_KE_phenotyping_2010	APPLE_KE_E2_lb	21.9559999999999995
9	Apple_KE_phenotyping_2010	APPLE_KE_E2_lb	23.7360000000000007
10	Apple_KE_phenotyping_2010	APPLE_KE_EQ	5
11	Apple_KE_phenotyping_2010	APPLE_KE_EQ	6
12	Apple_KE_phenotyping_2010	APPLE_KE_FRTDIAM	2.85599999999999987
13	Apple_KE_phenotyping_2010	APPLE_KE_FRTDIAM	2.92300000000000004
14	Apple_KE_phenotyping_2010	APPLE_KE_FRTWT_G	220.899304000000001
15	Apple_KE_phenotyping_2010	APPLE_KE_FRTWT_G	250.836376000000001
16	Apple_KE_phenotyping_2010	APPLE_KE_FRTWT_LB	0.486999999999999988
17	Apple_KE_phenotyping_2010	APPLE_KE_FRTWT_LB	0.553000000000000047
18	Apple_KE_phenotyping_2010	APPLE_KE_GL/BL	BLOOM
19	Apple_KE_phenotyping_2010	APPLE_KE_GRDCOL	2.5
20	Apple_KE_phenotyping_2010	APPLE_KE_GRDCOL	2.5
21	Apple_KE_phenotyping_2010	APPLE_KE_HARD	3
22	Apple_KE_phenotyping_2010	APPLE_KE_HARD	3.5
23	Apple_KE_phenotyping_2010	APPLE_KE_HUE	7.5
24	Apple_KE_phenotyping_2010	APPLE_KE_HUE	7.5
25	Apple_KE_phenotyping_2010	APPLE_KE_JUIC	3

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Paternal Parent Of

Germplasm Name	Description	Type
WSU79		accession
WSU80		accession
4A-100-0013		accession
4A-38-0013		accession
CV12-4A-55-0013		accession
CV12-4A-95-0013		accession

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