Msy_15A020920-mRNA1_Msyd_v2

Transcript Overview
NameMsy_15A020920-mRNA1_Msyd_v2
Unique NameMsy_15A020920-mRNA1_Msyd_v2
TypemRNA
OrganismMalus sylvestris ()
Sequence length369
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr15Achromosomechr15A:20495093..20495736 +Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & Annotationn/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
fatmsydL0015Fragaria x ananassa
fatmsydL1393Fragaria x ananassa
fatmsydL2821Fragaria x ananassa
fatmsydL2828Fragaria x ananassa
fatmsydL2947Fragaria x ananassa
fatmsydL3062Fragaria x ananassa
fatmsydL3330Fragaria x ananassa
msydroR0073Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
msydroR0083Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
msydroR0108Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
mdhmsydL205Malus x domestica HFTH1 Whole Genome v1.0Malus x domestica
mdhmsydL206Malus x domestica HFTH1 Whole Genome v1.0Malus x domestica
mdmsydL368Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
mdmsydL369Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
mdhmsydL372Malus x domestica HFTH1 Whole Genome v1.0Malus x domestica
mdmsydL587Malus x domestica GDDH13 v1.1 Whole Genome Assembly & AnnotationMalus x domestica
msydrchR0074Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
msydrchR0096Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
msydrchR0125Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
msydrchR0132Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
msdmsydL0072Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msdmsydL0073Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msdmsydL0118Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msdmsydL0122Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msdmsydL0426Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msdmsydL0506Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msimsydL024Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msydmsydL100Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msydmsydR103Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msydmsydR104Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msydmsydR143Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msydmsydR152Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msydmsydR166Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
msimsydL494Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
msimsydL495Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sieversii
mfumsydL0231Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mfumsydL0434Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mfumsydL0474Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mfumsydL0802Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mfumsydL1034Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mfumsydL1035Malus fusca Genome v1.1 Assembly & Annotation Malus fusca
mhamsydL053Malus x domestica 'Hanfu' Whole Genome v1.0 Assembly & AnnotationMalus x domestica
mhamsydL276Malus x domestica 'Hanfu' Whole Genome v1.0 Assembly & AnnotationMalus x domestica
mhamsydL474Malus x domestica 'Hanfu' Whole Genome v1.0 Assembly & AnnotationMalus x domestica
mhamsydL773Malus x domestica 'Hanfu' Whole Genome v1.0 Assembly & AnnotationMalus x domestica
miomsydL0881Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
miomsydL0884Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
miomsydL1016Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
miomsydL1308Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
mcomsydL0889Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria
mcomsydL0958Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria
mcomsydL1008Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria
mcomsydL1291Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria

Orthologs
Gene/TranscriptAssemblySpecies
MCO15B022040.1Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria
MIO15A017580.1Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
MIO15B022980.1Malus ioensis Genome v1.0 Assembly & AnnotationMalus ioensis
MCO15A019390.1Malus coronaria Genome v1.0 Assembly & AnnotationMalus coronaria

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Msy_15B020920-mRNA1_Msyd_v2Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & AnnotationMalus sylvestris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Msy_15A020920Msy_15A020920_Msyd_v2Malus sylvestrisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Msy_15A020920-mRNA1_Msyd_v2Msy_15A020920-mRNA1_Msyd_v2-proteinMalus sylvestrispolypeptide
Msy_15A020920-mRNA1_Msyd_v2Msy_15A020920-mRNA1_Msyd_v2Malus sylvestrispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Msy_15A020920-mRNA1:five_prime_UTR_Msyd_v2Msy_15A020920-mRNA1:five_prime_UTR_Msyd_v2Malus sylvestrisfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Msy_15A020920-mRNA1:exon_Msyd_v2Msy_15A020920-mRNA1:exon_Msyd_v2Malus sylvestrisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Msy_15A020920-mRNA1:CDS_Msyd_v2Msy_15A020920-mRNA1:CDS_Msyd_v2Malus sylvestrisCDS


Homology
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|587892612|gb|EXB81187.1| (DNA-directed RNA polymerase subunit beta' [Morus notabilis])

HSP 1 Score: 133.65 bits (335), Expect = 1.208e-35
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRDGAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKK-LNIYM 116
            IGDPISVPTQDMLI LYVLTSGN R  AYRQK I+LDS LWL W++DQ VITSRE PI+VHY+SLGT+HEIYGH LIVRSIKK+ L IY+
Sbjct:  203 IGDPISVPTQDMLIGLYVLTSGNRR--AYRQKRIHLDSPLWLRWRLDQRVITSREAPIEVHYQSLGTYHEIYGHLLIVRSIKKEILCIYL 290
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|402238708|gb|AFQ39111.1| (RNA polymerase beta subunit, partial (plastid) [Fragaria vesca subsp. americana] >gi|402238717|gb|AFQ39117.1| RNA polymerase beta subunit, partial (plastid) [Fragaria x ananassa subsp. cuneifolia] >gi|402238720|gb|AFQ39119.1| RNA polymerase beta subunit, partial (plastid) [Fragaria virginiana] >gi|402238723|gb|AFQ39121.1| RNA polymerase beta subunit, partial (plastid) [Fragaria bucharica] >gi|402238726|gb|AFQ39123.1| RNA polymerase beta subunit, partial (plastid) [Fragaria orientalis] >gi|402238729|gb|AFQ39125.1| RNA polymerase beta subunit, partial (plastid) [Fragaria viridis] >gi|402238732|gb|AFQ39127.1| RNA polymerase beta subunit, partial (plastid) [Fragaria chinensis] >gi|402238735|gb|AFQ39129.1| RNA polymerase beta subunit, partial (plastid) [Fragaria moupinensis] >gi|402238738|gb|AFQ39131.1| RNA polymerase beta subunit, partial (plastid) [Fragaria tibetica] >gi|402238741|gb|AFQ39133.1| RNA polymerase beta subunit, partial (plastid) [Fragaria daltoniana] >gi|402238744|gb|AFQ39135.1| RNA polymerase beta subunit, partial (plastid) [Fragaria corymbosa] >gi|402238747|gb|AFQ39137.1| RNA polymerase beta subunit, partial (plastid) [Fragaria gracilis] >gi|406365488|gb|AFS35571.1| RNA polymerase beta subunit', partial (plastid) [Fragaria pentaphylla])

HSP 1 Score: 127.102 bits (318), Expect = 2.286e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|371926666|gb|AEX58447.1| (RNA polymerase beta (chloroplast) [Theobroma grandiflorum])

HSP 1 Score: 134.035 bits (336), Expect = 4.857e-34
Identity = 72/126 (57.14%), Postives = 79/126 (62.70%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDMLI LYVLTSGN R                                     GAYRQK INLDS LWL WQ+DQCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+KK++
Sbjct:  519 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKNYQNERIADKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 644
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|328924775|gb|ADO64881.2| (RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926010|gb|AEX57799.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926748|gb|AEX58528.1| RNA polymerase beta (chloroplast) [Theobroma cacao])

HSP 1 Score: 134.035 bits (336), Expect = 5.691e-34
Identity = 71/121 (58.68%), Postives = 77/121 (63.64%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                     GAYRQK INLDS LWL WQ+DQCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+KK++
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKNYQNERIADKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 644
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|313199694|ref|YP_004021308.1| (RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|309321258|gb|ADO64801.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371925928|gb|AEX57718.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926092|gb|AEX57880.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926174|gb|AEX57961.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926256|gb|AEX58042.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926338|gb|AEX58123.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926420|gb|AEX58204.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926502|gb|AEX58285.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|371926584|gb|AEX58366.1| RNA polymerase beta (chloroplast) [Theobroma cacao] >gi|1184802649|gb|ARJ62191.1| RNA polymerase beta (plastid) [Theobroma cacao])

HSP 1 Score: 134.035 bits (336), Expect = 5.805e-34
Identity = 71/121 (58.68%), Postives = 77/121 (63.64%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                     GAYRQK INLDS LWL WQ+DQCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+KK++
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKNYQNERIADKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 644
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1023996043|gb|KZV27572.1| (DNA-directed RNA polymerase subunit beta'-like [Dorcoceras hygrometricum])

HSP 1 Score: 126.716 bits (317), Expect = 8.478e-34
Identity = 72/124 (58.06%), Postives = 80/124 (64.52%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGN-------------HRD--------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN             HRD                          GAYRQK INLDS LWL W++DQ VI+SRETPI+VHYESLGT++EIYGHYLIVRSIKK++
Sbjct:   80 IGDPISVPTQDMLIGLYVLTSGNRRGICINRYNRWNHRDYQNKRGDNKNYNYTKEPLFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISSRETPIEVHYESLGTYYEIYGHYLIVRSIKKEI 203
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1271054978|gb|PHT65495.1| (DNA-directed RNA polymerase subunit beta' [Capsicum annuum])

HSP 1 Score: 126.716 bits (317), Expect = 9.476e-34
Identity = 70/125 (56.00%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KK++
Sbjct:   86 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQI 210
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|386800828|ref|YP_006303482.1| (RNA polymerase beta' subunit (chloroplast) [Gossypium gossypioides] >gi|329317062|gb|AEB90421.1| RNA polymerase beta' subunit (chloroplast) [Gossypium gossypioides])

HSP 1 Score: 132.88 bits (333), Expect = 1.606e-33
Identity = 72/129 (55.81%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL W+++QCVI SRE PI+VHYESLGTHHEIYGHYLIVRS+KKK+
Sbjct:  519 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKSYQNERIDDNNYKSTREPFFCNSYDAIGAYRQKRINLDSPLWLRWRLEQCVIASREAPIEVHYESLGTHHEIYGHYLIVRSLKKKI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|959125106|ref|YP_009185589.1| (RNA polymerase beta (plastid) [Tilia paucicostata] >gi|953273670|gb|ALO63908.1| RNA polymerase beta (plastid) [Tilia paucicostata])

HSP 1 Score: 132.494 bits (332), Expect = 2.016e-33
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL W++DQCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+KKK+
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKKI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|959124848|ref|YP_009185334.1| (RNA polymerase beta (plastid) [Tilia amurensis] >gi|959124934|ref|YP_009185419.1| RNA polymerase beta (plastid) [Tilia mandshurica] >gi|959125020|ref|YP_009185504.1| RNA polymerase beta (plastid) [Tilia oliveri] >gi|953273412|gb|ALO63653.1| RNA polymerase beta (plastid) [Tilia amurensis] >gi|953273498|gb|ALO63738.1| RNA polymerase beta (plastid) [Tilia mandshurica] >gi|953273584|gb|ALO63823.1| RNA polymerase beta (plastid) [Tilia oliveri])

HSP 1 Score: 132.494 bits (332), Expect = 2.225e-33
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL W++DQCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+KKK+
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKKI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. Araport11
Match: ATCG00180.1 (| DNA-directed RNA polymerase family protein | ChrC:20251-23084 REVERSE LENGTH=680 | 201606)

HSP 1 Score: 119.398 bits (298), Expect = 3.657e-32
Identity = 66/123 (53.66%), Postives = 71/123 (57.72%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKK 111
            IGDPISVPTQDMLI LYVLTSG  R                                        GAYRQK INLDS LWL WQ+DQ VI SRE PI+VHYES G +HEIY HYLIVRS+KK+
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKE 646
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_GOSHI (DNA-directed RNA polymerase subunit beta' OS=Gossypium hirsutum OX=3635 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 6.731e-35
Identity = 71/129 (55.04%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL WQ++QCVI SRE PI+VHYES GT+HEIYGHYLIVRS+KKK+
Sbjct:  519 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKSYQNERIDDNNYKSTREPFFCNSYDAIGAYRQKRINLDSPLWLRWQLEQCVIASREAPIEVHYESSGTYHEIYGHYLIVRSLKKKI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLLC (DNA-directed RNA polymerase subunit beta' OS=Solanum lycopersicum OX=4081 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.123e-34
Identity = 71/125 (56.80%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KKK+
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKKI 648
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLBU (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum OX=147425 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 4.123e-34
Identity = 71/125 (56.80%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KKK+
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKKI 648
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLTU (DNA-directed RNA polymerase subunit beta' OS=Solanum tuberosum OX=4113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.344e-34
Identity = 71/125 (56.80%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KKK+
Sbjct:  530 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKKI 654
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_TOBAC (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tabacum OX=4097 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.238e-33
Identity = 70/125 (56.00%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KK++
Sbjct:  523 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_NICSY (DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris OX=4096 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.253e-33
Identity = 70/125 (56.00%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KK++
Sbjct:  524 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKQI 648
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.440e-33
Identity = 70/129 (54.26%), Postives = 78/129 (60.47%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL W++DQ VI SRE PI+VHYESLGTHHEIYG+YLIV+SIKK++
Sbjct:  519 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.454e-33
Identity = 69/129 (53.49%), Postives = 77/129 (59.69%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDML+ LYVLTSG  R                                        GAYRQK INLDS LWL WQ+DQ VI SRE PI+VHYESLGT+HEIYGHYLIVRS+KK++
Sbjct:  519 LLSPAIGDPISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEI 647
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_CITSI (DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis OX=2711 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.517e-33
Identity = 70/129 (54.26%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKK-LNIYM 116
            IGDPIS+PTQDMLI LYVLTSGN R                                        GAYRQK INLDS LWL W++DQ +I SRE PI+VHYESLGT HEIYGHYLIVRS+KK+ L+IY+
Sbjct:  524 IGDPISIPTQDMLIGLYVLTSGNRRGICANRYNTWNRRNYPDERIDDNSYTYTKEPLFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRLIASREAPIEVHYESLGTSHEIYGHYLIVRSVKKEILSIYI 652
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: RPOC1_EUCGG (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.179e-32
Identity = 68/131 (51.91%), Postives = 78/131 (59.54%), Query Frame = 0 
Query:   23 LVYLFIGDPISVPTQDMLIRLYVLTSGNHRD-----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            L+   IGDPISVPTQDMLI LYVLTSGN R                                          GAYRQK INLDS LWL W++DQ +I SRE PI++HYESLGT+HEIYGHYLIVRS+KK++
Sbjct:  519 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICTNRYNPWNRRNYQNERTYDNNYKYRKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIYGHYLIVRSVKKEI 649
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A5D2JSJ6_GOSTO (DNA-directed RNA polymerase subunit OS=Gossypium tomentosum OX=34277 GN=ES332_D08G106300v1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.408e-36
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIK 109
            IGDPISVPTQDMLI LYVLTSGN R+          GAYRQK INLDS LWL W+++QCVI SRE PI+VHYESLGT+HEIYGHYLIVRS+K
Sbjct:  419 IGDPISVPTQDMLIGLYVLTSGNRREPFFCNSYDAIGAYRQKRINLDSPLWLRWRLEQCVIASREAPIEVHYESLGTYHEIYGHYLIVRSLK 510
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: W9RM49_9ROSA (DNA-directed RNA polymerase subunit OS=Morus notabilis OX=981085 GN=L484_013127 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.412e-35
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRDGAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKK-LNIYM 116
            IGDPISVPTQDMLI LYVLTSGN R  AYRQK I+LDS LWL W++DQ VITSRE PI+VHY+SLGT+HEIYGH LIVRSIKK+ L IY+
Sbjct:  203 IGDPISVPTQDMLIGLYVLTSGNRR--AYRQKRIHLDSPLWLRWRLDQRVITSREAPIEVHYQSLGTYHEIYGHLLIVRSIKKEILCIYL 290
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: M1BHU2_SOLTU (DNA-directed RNA polymerase OS=Solanum tuberosum OX=4113 GN=rpoB PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.691e-35
Identity = 71/125 (56.80%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD----------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGNHR                                         GAYRQK INLDS LWL W++DQ VI SRETPI+VHYESLGT +EIYGHYLIVRS+KKK+
Sbjct:   30 IGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRSDNSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGTFYEIYGHYLIVRSLKKKI 154
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7IFT1_FRAVE (DNA-directed RNA polymerase (Fragment) OS=Fragaria vesca subsp. americana OX=101019 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7INY1_FRAVI (DNA-directed RNA polymerase (Fragment) OS=Fragaria viridis OX=64942 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7IK18_9ROSA (DNA-directed RNA polymerase (Fragment) OS=Fragaria orientalis OX=101013 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J9Y6P1_9ROSA (DNA-directed RNA polymerase (Fragment) OS=Fragaria pentaphylla OX=101014 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7IMX2_FRAAN (DNA-directed RNA polymerase (Fragment) OS=Fragaria x ananassa subsp. cuneifolia OX=674471 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7IK30_9ROSA (DNA-directed RNA polymerase (Fragment) OS=Fragaria daltoniana OX=101010 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
[Close]
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: J7IMY1_9ROSA (DNA-directed RNA polymerase (Fragment) OS=Fragaria chinensis OX=674467 GN=rpoC1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.672e-34
Identity = 71/124 (57.26%), Postives = 77/124 (62.10%), Query Frame = 0 
Query:   28 IGDPISVPTQDMLIRLYVLTSGNHRD---------------------------------------GAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYGHYLIVRSIKKKL 112
            IGDPISVPTQDMLI LYVLTSGN R                                        GAYRQK I+LDS LWL WQ+DQ VITSRETPI+VHYESLGT HEIYGHY+IVRSIKK++
Sbjct:   45 IGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRTNSKNERIADNNYKYTNEPFFCNSYDAIGAYRQKRIHLDSPLWLRWQLDQRVITSRETPIEVHYESLGTSHEIYGHYVIVRSIKKEV 168
The following BLAST results are available for this feature:
BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. NCBI nr
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|587892612|gb|EXB81187.1|1.208e-3577.78DNA-directed RNA polymerase subunit beta' [Morus n... [more]
gi|402238708|gb|AFQ39111.1|2.286e-3457.26RNA polymerase beta subunit, partial (plastid) [Fr... [more]
gi|371926666|gb|AEX58447.1|4.857e-3457.14RNA polymerase beta (chloroplast) [Theobroma grand... [more]
gi|328924775|gb|ADO64881.2|5.691e-3458.68RNA polymerase beta (chloroplast) [Theobroma cacao... [more]
gi|313199694|ref|YP_004021308.1|5.805e-3458.68RNA polymerase beta (chloroplast) [Theobroma cacao... [more]
gi|1023996043|gb|KZV27572.1|8.478e-3458.06DNA-directed RNA polymerase subunit beta'-like [Do... [more]
gi|1271054978|gb|PHT65495.1|9.476e-3456.00DNA-directed RNA polymerase subunit beta' [Capsicu... [more]
gi|386800828|ref|YP_006303482.1|1.606e-3355.81RNA polymerase beta' subunit (chloroplast) [Gossyp... [more]
gi|959125106|ref|YP_009185589.1|2.016e-3357.26RNA polymerase beta (plastid) [Tilia paucicostata]... [more]
gi|959124848|ref|YP_009185334.1|2.225e-3357.26RNA polymerase beta (plastid) [Tilia amurensis] >g... [more]
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BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. Araport11
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs Araport11 )
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00180.13.657e-3253.66| DNA-directed RNA polymerase family protein | Chr... [more]
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BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RPOC1_GOSHI6.731e-3555.04DNA-directed RNA polymerase subunit beta' OS=Gossy... [more]
RPOC1_SOLLC4.123e-3456.80DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_SOLBU4.123e-3456.80DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_SOLTU5.344e-3456.80DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_TOBAC1.238e-3356.00DNA-directed RNA polymerase subunit beta' OS=Nicot... [more]
RPOC1_NICSY1.253e-3356.00DNA-directed RNA polymerase subunit beta' OS=Nicot... [more]
RPOC1_CUCSA2.440e-3354.26DNA-directed RNA polymerase subunit beta' OS=Cucum... [more]
RPOC1_CARPA6.454e-3353.49DNA-directed RNA polymerase subunit beta' OS=Caric... [more]
RPOC1_CITSI6.517e-3354.26DNA-directed RNA polymerase subunit beta' OS=Citru... [more]
RPOC1_EUCGG1.179e-3251.91DNA-directed RNA polymerase subunit beta' OS=Eucal... [more]
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BLAST of Msy_15A020920-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs UniProt TrEMBL )
Total hits: 10
Match NameE-valueIdentityDescription
A0A5D2JSJ6_GOSTO5.408e-3673.91DNA-directed RNA polymerase subunit OS=Gossypium t... [more]
W9RM49_9ROSA1.412e-3577.78DNA-directed RNA polymerase subunit OS=Morus notab... [more]
M1BHU2_SOLTU7.691e-3556.80DNA-directed RNA polymerase OS=Solanum tuberosum O... [more]
J7IFT1_FRAVE2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J7INY1_FRAVI2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J7IK18_9ROSA2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J9Y6P1_9ROSA2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J7IMX2_FRAAN2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J7IK30_9ROSA2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
J7IMY1_9ROSA2.672e-3457.26DNA-directed RNA polymerase (Fragment) OS=Fragaria... [more]
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InterPro
Analysis Name: InterProScan Analysis for Malus sylvestris Diploid v1.0 proteins
Date Performed: 2021-08-03
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 26..117
e-value: 4.3E-6
score: 28.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>Msy_15A020920-mRNA1_Msyd_v2 ID=Msy_15A020920-mRNA1_Msyd_v2; Name=Msy_15A020920-mRNA1_Msyd_v2; organism=Malus sylvestris; type=mRNA; length=369bp
ATGGTGATTAAATGGTTGGTCAAATGGCTGTTCATGTACCTTTATCTTTG
GAGGCTCAAGCGGAGGCTCGTTTACTTATTTATTGGGGATCCTATTTCCG
TACCAACTCAAGATATGCTTATTCGGCTCTATGTATTAACGAGTGGAAAT
CATCGAGATGGAGCTTATCGGCAGAAAATAATCAATTTAGATAGCCATTT
GTGGCTCTGGTGGCAAATAGATCAATGTGTTATTACTTCGAGAGAAACTC
CCATCAAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGG
CACTATCTAATAGTAAGAAGTATAAAAAAGAAATTAAATATATATATGTT
CGAACCACAGTTTTCCTAG
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protein sequence of Msy_15A020920-mRNA1_Msyd_v2

>Msy_15A020920-mRNA1_Msyd_v2 ID=Msy_15A020920-mRNA1_Msyd_v2; Name=Msy_15A020920-mRNA1_Msyd_v2; organism=Malus sylvestris; type=polypeptide; length=123bp
MVIKWLVKWLFMYLYLWRLKRRLVYLFIGDPISVPTQDMLIRLYVLTSGN
HRDGAYRQKIINLDSHLWLWWQIDQCVITSRETPIKVHYESLGTHHEIYG
HYLIVRSIKKKLNIYMFEPQFS*
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mRNA from alignment at chr15A:20495093..20495736+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Msy_15A020920-mRNA1_Msyd_v2 ID=Msy_15A020920-mRNA1_Msyd_v2; Name=Msy_15A020920-mRNA1_Msyd_v2; organism=Malus sylvestris; type=mRNA; length=644bp; location=Sequence derived from: chr15A:20495093..20495736+ (Malus sylvestris
ATTATTAGATTAGGCATATAGTCGTTCCAACCCATTTTCGTAGAAAGACA
TGCTATTTGTTTACATCTATTAGTTTGTAAGGGATTCAATGTAGACTTTG
ATGGTGATTAAATGGTTGGTCAAATGGCTGTTCATGTACCTTTATCTTTG
GAGGCTCAAGCGGAGGCTCGTTTACTTATGTTTCTCATATGAACCTCTTG
TTTACTTATGTTTCTCATATGAACCTCTTGTCTCCAGTTATTGGGGATCC
TATTTCCGTACCAACTCAAGATATGCTTATTCGGCTCTATGTATTAACGA
GTGGAAATCATCGAGGTATTTGTGCAAATAGGTATAATTCATGTAATCGC
ATAAATTATCAAAATAAAAGAATTGAATAATAACTATAAGTATATGAAAG
AACCTTTTTTTTTTGTAATTCCTATGATGTAGATGGAGCTTATCGGCAGA
AAATAATCAATTTAGATAGCCATTTGTGGCTCTGGTGGCAAATAGATCAA
TGTGTTATTACTTCGAGAGAAACTCCCATCAAAGTTCACTATGAATCTTT
GGGTACCCATCATGAGATTTATGGGCACTATCTAATAGTAAGAAGTATAA
AAAAGAAATTAAATATATATATGTTCGAACCACAGTTTTCCTAG
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Coding sequence (CDS) from alignment at chr15A:20495093..20495736+

>Msy_15A020920-mRNA1_Msyd_v2 ID=Msy_15A020920-mRNA1_Msyd_v2; Name=Msy_15A020920-mRNA1_Msyd_v2; organism=Malus sylvestris; type=CDS; length=369bp; location=Sequence derived from: chr15A:20495093..20495736+ (Malus sylvestris
ATGGTGATTAAATGGTTGGTCAAATGGCTGTTCATGTACCTTTATCTTTG
GAGGCTCAAGCGGAGGCTCGTTTACTTATTTATTGGGGATCCTATTTCCG
TACCAACTCAAGATATGCTTATTCGGCTCTATGTATTAACGAGTGGAAAT
CATCGAGATGGAGCTTATCGGCAGAAAATAATCAATTTAGATAGCCATTT
GTGGCTCTGGTGGCAAATAGATCAATGTGTTATTACTTCGAGAGAAACTC
CCATCAAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGG
CACTATCTAATAGTAAGAAGTATAAAAAAGAAATTAAATATATATATGTT
CGAACCACAGTTTTCCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR042102RNA_pol_Rpb1_3_sf