Msy_06B013280-mRNA1_Msyd_v2
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|657965128|ref|XP_008374209.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Malus domestica]) HSP 1 Score: 354.369 bits (908), Expect = 6.617e-123 Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MTKRRVVAVVASLLLFGVVA VVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEP+RIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS
Sbjct: 1 MTKRRVVAVVASLLLFGVVAVVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPDRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 172
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1079256046|ref|XP_018500263.1| (PREDICTED: TPD1 protein homolog 1-like [Pyrus x bretschneideri]) HSP 1 Score: 328.561 bits (841), Expect = 1.065e-112 Identity = 162/172 (94.19%), Postives = 162/172 (94.19%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MTKRRVVAVVASLLLFGVVA VVLLFAPGFDRDGFLKPESSEAANSTL AIHRKLLVRA AMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTG ISHIHL SSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS
Sbjct: 1 MTKRRVVAVVASLLLFGVVALVVLLFAPGFDRDGFLKPESSEAANSTLTAIHRKLLVRATAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGWGISHIHLXXXXXSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 172
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1079248123|ref|XP_018498699.1| (PREDICTED: TPD1 protein homolog 1-like [Pyrus x bretschneideri]) HSP 1 Score: 314.694 bits (805), Expect = 4.014e-107 Identity = 152/171 (88.89%), Postives = 157/171 (91.81%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
MTKR VVAV+ASLLLFGVVAAVVLLFAPGFD G L E SEA NSTL A+HRKLLVRA AMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMN C TGCDIS+IH+ CGWFSSARLVNPKIFKRLRYNDCLVNDGKPL +GGTVSFQYANTFSYKLSVSSVTC
Sbjct: 2 MTKRPVVAVLASLLLFGVVAAVVLLFAPGFDGAGNLMSELSEAVNSTLTAVHRKLLVRATAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNTCATGCDISNIHVACGWFSSARLVNPKIFKRLRYNDCLVNDGKPLVSGGTVSFQYANTFSYKLSVSSVTC 172
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1039929857|ref|XP_017185851.1| (PREDICTED: TPD1 protein homolog 1-like [Malus domestica]) HSP 1 Score: 289.656 bits (740), Expect = 2.291e-97 Identity = 147/171 (85.96%), Postives = 153/171 (89.47%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
MTKR VVAVVASLLLFGVVAAVVL+ A GFD G LK E EA NSTL AIHRKLL+RA AMEEPNRIRGDKCS+AD+VINQGPT PLPSGIPTYTVEIMN C TGCDI HIH+ CGWFSSARLVNPKIFKRLRYNDCLVNDGKPL +GGTVSFQYANTFSYKLSVSSVTC
Sbjct: 1 MTKRPVVAVVASLLLFGVVAAVVLVLALGFDGAGNLKSELXEAGNSTLTAIHRKLLIRATAMEEPNRIRGDKCSRADVVINQGPTSPLPSGIPTYTVEIMNTCATGCDIXHIHVACGWFSSARLVNPKIFKRLRYNDCLVNDGKPLVSGGTVSFQYANTFSYKLSVSSVTC 171
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|595859940|ref|XP_007211047.1| (protein TAPETUM DETERMINANT 1 [Prunus persica] >gi|1139773439|gb|ONI07911.1| hypothetical protein PRUPE_5G146900 [Prunus persica] >gi|1139773440|gb|ONI07912.1| hypothetical protein PRUPE_5G146900 [Prunus persica] >gi|1139773441|gb|ONI07913.1| hypothetical protein PRUPE_5G146900 [Prunus persica] >gi|1139773442|gb|ONI07914.1| hypothetical protein PRUPE_5G146900 [Prunus persica]) HSP 1 Score: 259.996 bits (663), Expect = 1.946e-85 Identity = 127/179 (70.95%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAA-------NSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MT+R V V +SLL+F V A VLLFAP FD F+ N+TL A HRKLL+RA M+EPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IHLTCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVSSV+CS
Sbjct: 3 MTRRVGVVVTSSLLVFFAVVAAVLLFAPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMDEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHLTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSSVSCS 181
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|645268655|ref|XP_008239632.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Prunus mume]) HSP 1 Score: 258.455 bits (659), Expect = 7.644e-85 Identity = 126/179 (70.39%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAA-------NSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MT+R V V +SLL+F V A VLLF P FD F+ N+TL A HRKLL+RA M+EPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IHLTCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVSSV+CS
Sbjct: 3 MTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMDEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHLTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSSVSCS 181
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1220032517|ref|XP_021814676.1| (protein TAPETUM DETERMINANT 1-like isoform X1 [Prunus avium] >gi|1220032519|ref|XP_021814682.1| protein TAPETUM DETERMINANT 1-like isoform X1 [Prunus avium]) HSP 1 Score: 257.684 bits (657), Expect = 1.458e-84 Identity = 125/179 (69.83%), Postives = 139/179 (77.65%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAA-------NSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MT+R V V +SLL+F V A VLLF P FD F+ N+TL A HRKLL+RA MEEPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IH+TCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVS+V+CS
Sbjct: 3 MTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMEEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHVTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSTVSCS 181
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1220032521|ref|XP_021814687.1| (protein TAPETUM DETERMINANT 1-like isoform X2 [Prunus avium]) HSP 1 Score: 250.751 bits (639), Expect = 7.614e-82 Identity = 124/179 (69.27%), Postives = 138/179 (77.09%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAA-------NSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MT+R V V +SLL+F V A VLLF P FD F+ N+TL A HRKLL+R MEEPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IH+TCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVS+V+CS
Sbjct: 3 MTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRE--MEEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHVTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSTVSCS 179
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|1366041671|ref|XP_024171326.1| (TPD1 protein homolog 1-like [Rosa chinensis] >gi|1366041674|ref|XP_024171327.1| TPD1 protein homolog 1-like [Rosa chinensis] >gi|1358142438|gb|PRQ16918.1| hypothetical protein RchiOBHm_Chr7g0189441 [Rosa chinensis]) HSP 1 Score: 244.202 bits (622), Expect = 2.708e-79 Identity = 126/175 (72.00%), Postives = 138/175 (78.86%), Query Frame = 0
Query: 49 RVVAVV--ASLLLFGVVAA-VVLLFAPGFDRDGFLKPES----SEAANSTLAAIHRKLLVRAAA-MEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
R AV+ ASLL FGVVAA VVLL +PGF G ES S NS LAA HRKLLVR +EEPNRI G+KCS++DIVI QGPT PLPSGIPTYTVEIMN+CVTGC+ISHIH TCGWFSSA LVNPK+F+RLRYNDCLVNDGKPL NGGT+SF+YANTF Y L VSSV C
Sbjct: 2 RAAAVIGTASLLFFGVVAAAVVLLCSPGFLNGGHGFMESRLLRSGEGNSKLAAAHRKLLVRGQENVEEPNRIWGEKCSRSDIVIEQGPTAPLPSGIPTYTVEIMNVCVTGCNISHIHFTCGWFSSATLVNPKVFRRLRYNDCLVNDGKPLVNGGTISFEYANTFLYPLKVSSVAC 176
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Match: gi|802770527|ref|XP_012090642.1| (protein TAPETUM DETERMINANT 1 [Jatropha curcas] >gi|1173849878|ref|XP_020540651.1| protein TAPETUM DETERMINANT 1 [Jatropha curcas] >gi|643706446|gb|KDP22578.1| hypothetical protein JCGZ_26409 [Jatropha curcas]) HSP 1 Score: 234.572 bits (597), Expect = 1.579e-75 Identity = 113/147 (76.87%), Postives = 124/147 (84.35%), Query Frame = 0
Query: 72 PGFDRDGFLKPES--SEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
P F GF+ S+ + TL+A HRKLL R+ AMEEPNRI G+KC+KADIVINQGPT PLPSGIPTYTVEIMN+CVTGCDIS IHLTCGWFSSARL+NPKIFKRLRYNDCLVNDGKPL NGGT+SF+YANTF Y LSVSSV CS
Sbjct: 25 PPFFTGGFMGSSHPISKGTSYTLSAPHRKLLSRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVICS 171
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. Araport11
Match: AT1G32583.2 (| tapetum determinant protein | Chr1:11787351-11788103 FORWARD LENGTH=179 | 201606) HSP 1 Score: 170.244 bits (430), Expect = 1.436e-53 Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 80 LKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
LK S + N A+ RKLL+ + NRI G CSK DIV+ QG T PLPSG+P+YTVEI N CV+ C+I+ IH++CGWFSS RLVNP++F+RL Y+DCLVNDG+PL G ++SFQYAN+FSY LSV+SV+C
Sbjct: 44 LKARSFVSINENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. Araport11
Match: AT1G32583.1 (| tapetum determinant protein | Chr1:11787351-11788103 FORWARD LENGTH=179 | 201606) HSP 1 Score: 170.244 bits (430), Expect = 1.436e-53 Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 80 LKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
LK S + N A+ RKLL+ + NRI G CSK DIV+ QG T PLPSG+P+YTVEI N CV+ C+I+ IH++CGWFSS RLVNP++F+RL Y+DCLVNDG+PL G ++SFQYAN+FSY LSV+SV+C
Sbjct: 44 LKARSFVSINENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. Araport11
Match: AT4G24972.1 (| tapetum determinant 1 | Chr4:12838220-12839619 FORWARD LENGTH=176 | 201606) HSP 1 Score: 167.548 bits (423), Expect = 1.616e-52 Identity = 89/182 (48.90%), Postives = 121/182 (66.48%), Query Frame = 0
Query: 45 MTKRR--VVAVVASLLLFGVVAAVVLLFAPGFD--RDGFLKPESSEAANSTLAAIHRKLLV------RAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
M +RR V A + S LL+G+ A+V + A G + RD + ++ S+ + HRK+L+ + EP RI G+KC DIV+NQ T P+P+GIP Y VEI N C++GC IS IH+ CGWFSSA+L+NP++FKR+ Y+DCLVN+GKPL G T+SF YANTF Y LSV+ VTC+
Sbjct: 1 MNRRRLLVSATLLSYLLYGM--ALVSVEASGGEKLRDNL---DLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. Araport11
Match: AT1G05835.1 (| PHD finger protein | Chr1:1762248-1762702 FORWARD LENGTH=127 | 201606) HSP 1 Score: 48.1358 bits (113), Expect = 4.161e-7 Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 139 YTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYN--DCLVNDGKPLANGGTVSFQYANTFSYKL 208
+ VE+MN C C I ++ L C F + LV+P + L + +C+VNDG PL+ T+SF Y+NT + L
Sbjct: 48 FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.396e-52 Identity = 80/136 (58.82%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 80 LKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
LK S + N A+ RKLL+ + NRI G CSK DIV+ QG T PLPSG+P+YTVEI N CV+ C+I+ IH++CGWFSS RLVNP++F+RL Y+DCLVNDG+PL G ++SFQYAN+FSY LSV+SV+C
Sbjct: 44 LKARSFVSINENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.571e-51 Identity = 89/182 (48.90%), Postives = 121/182 (66.48%), Query Frame = 0
Query: 45 MTKRR--VVAVVASLLLFGVVAAVVLLFAPGFD--RDGFLKPESSEAANSTLAAIHRKLLV------RAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
M +RR V A + S LL+G+ A+V + A G + RD + ++ S+ + HRK+L+ + EP RI G+KC DIV+NQ T P+P+GIP Y VEI N C++GC IS IH+ CGWFSSA+L+NP++FKR+ Y+DCLVN+GKPL G T+SF YANTF Y LSV+ VTC+
Sbjct: 1 MNRRRLLVSATLLSYLLYGM--ALVSVEASGGEKLRDNL---DLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTCA 176
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 3.776e-37 Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = 0
Query: 115 DKCSKAD-IVINQGPTPPLPSGIPTYTVEIMNMCVTG------CDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
D C+ AD I I QG PLPSG+P YTV++MN C G C I+ IH+ CGWFSS LV+P++F+RL ++DCL+NDG+PL G TVSF+Y N+F YKLSVS TC
Sbjct: 112 DGCAGADDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVFRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.804e-31 Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 0
Query: 110 NRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
R++ D CS+ ++V+ Q LPSGIPTY+VEI+N+C T C + +H++CG F+SA LV+P F+R+ +NDCLV G L VSFQY+N+F+Y L+V++V C
Sbjct: 64 QRMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVDPSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A498JM98_MALDO (Morc6_S5 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_008487 PE=3 SV=1) HSP 1 Score: 416.387 bits (1069), Expect = 1.635e-136 Identity = 200/207 (96.62%), Postives = 203/207 (98.07%), Query Frame = 0
Query: 10 YFFTAELRSLLSNSFVGSALALSEPSSFPTRLTRTMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
+ F+ LRSLLSNSFVGSALALSEPSSFPTRLTRTMTKRRVVAVVASLLLFGVVA VVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEP+RIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS
Sbjct: 787 HAFSFRLRSLLSNSFVGSALALSEPSSFPTRLTRTMTKRRVVAVVASLLLFGVVAVVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPDRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 993
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A5N5ICJ8_9ROSA (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029391 PE=4 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 3.466e-120 Identity = 169/175 (96.57%), Postives = 169/175 (96.57%), Query Frame = 0
Query: 45 MTKRRVVAVVA---SLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MTKRRVVAVVA SLLLFGVVA VVLLFAPGFDRDGFLKPESSEAANSTL AIHRKLLVRA AMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS
Sbjct: 1 MTKRRVVAVVAVVASLLLFGVVAVVVLLFAPGFDRDGFLKPESSEAANSTLTAIHRKLLVRATAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 175
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A5N5GED8_9ROSA (Morc6_S5 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_012252 PE=3 SV=1) HSP 1 Score: 339.732 bits (870), Expect = 7.146e-107 Identity = 172/205 (83.90%), Postives = 178/205 (86.83%), Query Frame = 0
Query: 11 FFTAELRSLLSNSFVGSALALSEPSSFPTRLTRTMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
+F L SLL NSFV S L+L +PSSF TRLT M KR VVAVVASLLLFGVVAAVVLLFAPGFD G L E SEA NSTL A+HRKLLVRA MEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMN C TGCDISHIH+ CGWFSSARLVNPKIFKRLRYNDCLVNDGKPL +GGTVSFQYANTFSYKLSVSSVTC
Sbjct: 822 YFQLNLLSLLGNSFVDSELSLLQPSSFSTRLTHMMMKRPVVAVVASLLLFGVVAAVVLLFAPGFDGAGNLMSELSEAVNSTLTAVHRKLLVRATPMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNTCATGCDISHIHVACGWFSSARLVNPKIFKRLRYNDCLVNDGKPLVSGGTVSFQYANTFSYKLSVSSVTC 1026
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A498I6Q5_MALDO (Morc6_S5 domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_039835 PE=3 SV=1) HSP 1 Score: 331.257 bits (848), Expect = 2.997e-103 Identity = 172/215 (80.00%), Postives = 184/215 (85.58%), Query Frame = 0
Query: 1 SSVPSPSHLYFFTAELRSLLSNSFVGSALALSEPSSFPTRLTRTMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
+S P S L ++L SLL NSFV S L+ S+PSSF TRLT TMTKR VVAVVASLLLFGVVAAVVL+ A GFD G LK E +EA NSTL AIHRKLL+RA AMEEPNRIRGDKCS+AD+VINQGPT PLPSGIPTYTVEIMN C TGCDISHIH+ CGWFSSARLVNPKIFKRLRYNDCLVNDGKPL +GGTVSFQYANTFSYKLSVSSVTC
Sbjct: 880 TSNPIDSALAIVFSKLLSLLGNSFVDSVLSFSQPSSFSTRLTDTMTKRPVVAVVASLLLFGVVAAVVLVLALGFDGAGNLKSELAEAGNSTLTAIHRKLLIRATAMEEPNRIRGDKCSRADVVINQGPTSPLPSGIPTYTVEIMNTCATGCDISHIHVACGWFSSARLVNPKIFKRLRYNDCLVNDGKPLVSGGTVSFQYANTFSYKLSVSSVTC 1094
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A540NPE2_MALBA (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_001554 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 1.600e-97 Identity = 149/171 (87.13%), Postives = 154/171 (90.06%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTC 215
MTK VVAVVASLLLFGVVAAVVLL A GFD G LK E SEA NSTL AIHRKLL+RA AMEEPNRIRGDKCS+AD+VINQGPT PLPSGIPTYTVEIMN C TGCDISHIH+ CGWFSSARLVNPKIFKRLRYNDCLVNDGKPL +GGTVSFQYANTFSYKLSVSSVTC
Sbjct: 1 MTKWPVVAVVASLLLFGVVAAVVLLLALGFDGAGNLKSELSEAGNSTLTAIHRKLLIRATAMEEPNRIRGDKCSRADVVINQGPTSPLPSGIPTYTVEIMNTCATGCDISHIHVACGWFSSARLVNPKIFKRLRYNDCLVNDGKPLVSGGTVSFQYANTFSYKLSVSSVTC 171
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A540KM30_MALBA (Morc6_S5 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_039239 PE=3 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 4.579e-93 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 77 DGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
DGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDG+PLANGGTVSFQYANTFSYKLSVSSVTCS
Sbjct: 671 DGFLKPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGEPLANGGTVSFQYANTFSYKLSVSSVTCS 810
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A4Y1RH69_PRUDU (Protein TAPETUM DETERMINANT 1 OS=Prunus dulcis OX=3755 GN=Prudu_014570 PE=4 SV=1) HSP 1 Score: 271.937 bits (694), Expect = 2.842e-89 Identity = 139/199 (69.85%), Postives = 155/199 (77.89%), Query Frame = 0
Query: 30 ALSEPSSFPTRLTR-----TMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPE-------SSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
+LS+PSSF T+LTR MT+R V V +SLL+F V A VLLF P FD F+ SS A N+TL A HRKLL+RA M+EPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IHLTCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVSSV+CS
Sbjct: 36 SLSQPSSFLTQLTRPLNAMMMTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMDEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHLTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSSVSCS 234
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: M5WG36_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G146900 PE=4 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 2.274e-85 Identity = 127/179 (70.95%), Postives = 140/179 (78.21%), Query Frame = 0
Query: 45 MTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLKPESSEAA-------NSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
MT+R V V +SLL+F V A VLLFAP FD F+ N+TL A HRKLL+RA M+EPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IHLTCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVSSV+CS
Sbjct: 3 MTRRVGVVVTSSLLVFFAVVAAVLLFAPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMDEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHLTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSSVSCS 181
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A5E4F2L5_PRUDU (PREDICTED: MICRORCHIDIA OS=Prunus dulcis OX=3755 GN=ALMOND_2B025994 PE=3 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 1.559e-81 Identity = 138/199 (69.35%), Postives = 155/199 (77.89%), Query Frame = 0
Query: 30 ALSEPSSFPTRLTR-----TMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFL-------KPESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
+LS+PSSF T+LTR MT+R V V +SLL+F V A VLLF P FD F+ SS A N+TL A HRKLL+RA M+EPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCD+S IHLTCGWFSSARLVNP+IFKRL YNDCLVNDGKPL NGGT+SFQYANTF Y LSVSSV+CS
Sbjct: 839 SLSQPSSFLTQLTRPLNAMMMTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMDEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDVSRIHLTCGWFSSARLVNPRIFKRLHYNDCLVNDGKPLVNGGTLSFQYANTFLYHLSVSSVSCS 1037
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Match: A0A314ZF44_PRUYE (Protein MICRORCHIDIA 7 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_20848 PE=3 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 8.605e-81 Identity = 138/199 (69.35%), Postives = 155/199 (77.89%), Query Frame = 0
Query: 30 ALSEPSSFPTRLTR-----TMTKRRVVAVVASLLLFGVVAAVVLLFAPGFDRDGFLK-------PESSEAANSTLAAIHRKLLVRAAAMEEPNRIRGDKCSKADIVINQGPTPPLPSGIPTYTVEIMNMCVTGCDISHIHLTCGWFSSARLVNPKIFKRLRYNDCLVNDGKPLANGGTVSFQYANTFSYKLSVSSVTCS 216
+LS+PSSF TRLTR MT+R V V +SLL+F V A VLLF P FD F+ SS A N+TL A HRKLL+RA MEEPNRI G+KCSKADIVINQGPT PLPSGIPTYTVEIMN+C +GCDIS IH+TCGWFSSARLVNP+IFKRL YNDCLVN+GKPL +GGT+SFQYANTF Y LSVSSV+CS
Sbjct: 860 SLSQPSSFSTRLTRPLNAMMMTRRVGVVVTSSLLVFFAVVAAVLLFVPAFDHAVFMSIRHGSMGSSSSGAGNNTLTATHRKLLLRATEMEEPNRIPGEKCSKADIVINQGPTGPLPSGIPTYTVEIMNVCASGCDISRIHVTCGWFSSARLVNPRIFKRLHYNDCLVNNGKPLVSGGTLSFQYANTFLYHLSVSSVSCS 1058 The following BLAST results are available for this feature:
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. NCBI nr
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs NCBI nr) Total hits: 10
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. Araport11
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs Araport11 ) Total hits: 4
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy Swiss-Prot
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs UniProt Swissprot) Total hits: 4
BLAST of Msy_06B013280-mRNA1_Msyd_v2 vs. ExPASy TrEMBL
Analysis Date: 2021-08-03 (Blastp of Malus sylvestris Diploid v1.0 proteins vs UniProt TrEMBL ) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Malus sylvestris Diploid v1.0 proteins
Date Performed: 2021-08-03
Sequences
The
following sequences are available for this feature:
mRNA sequence >Msy_06B013280-mRNA1_Msyd_v2 ID=Msy_06B013280-mRNA1_Msyd_v2; Name=Msy_06B013280-mRNA1_Msyd_v2; organism=Malus sylvestris; type=mRNA; length=651bpback to top protein sequence of Msy_06B013280-mRNA1_Msyd_v2 >Msy_06B013280-mRNA1_Msyd_v2 ID=Msy_06B013280-mRNA1_Msyd_v2; Name=Msy_06B013280-mRNA1_Msyd_v2; organism=Malus sylvestris; type=polypeptide; length=217bpback to top mRNA from alignment at chr6B:26286769..26289538- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Msy_06B013280-mRNA1_Msyd_v2 ID=Msy_06B013280-mRNA1_Msyd_v2; Name=Msy_06B013280-mRNA1_Msyd_v2; organism=Malus sylvestris; type=mRNA; length=2770bp; location=Sequence derived from: chr6B:26286769..26289538- (Malus sylvestrisback to top Coding sequence (CDS) from alignment at chr6B:26286769..26289538- >Msy_06B013280-mRNA1_Msyd_v2 ID=Msy_06B013280-mRNA1_Msyd_v2; Name=Msy_06B013280-mRNA1_Msyd_v2; organism=Malus sylvestris; type=CDS; length=651bp; location=Sequence derived from: chr6B:26286769..26289538- (Malus sylvestrisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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