Search Haplotype Block

Search Haplotype Block is a page where you can search for haplotype blocks, a genomic region which was identified to have a distinct combination of SNP genotype. The sesarch options include species, halotype block name or genome location to which the haplotype block is aligned. From the individual haplotype block page, you can view all the haplotype (alleles) identified along with the SNP genotypes that constitutes each genotype.

Please Note: All the search categories below can be combined.

1. Species

Use these drop-down menus to limit results to a specific species.

2. Name

Users can search by haplotype block name for an exact match, contains, starts with or ends with the input, by selecting the desired option from the drop-down menu. The search is case-insensitive. 

3. Genome 

Users can limit their results of haplotype blocks by their aligned genome location. When a genome assembly is chosen in the drop-down menu next to 'Genome', the corresponding chromosome or scaffold names are dynamically displayed in the 'Chr/scaffold' drop-down menu. Choose any option and then type in the position in bp in the text boxes.

If you have any questions/comments/feedback about this search page, please let us know via the contact form.