The Sequence Retrieval tool allows downloading of nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be typed in the text boxes.
Below are currently available datasets for searching.
- Fragaria ananassa GDR RefTrans V1
- Fragaria Unigene v5.0
- Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation
- Fragaria vesca Whole Genome v1.1 Assembly & Annotation
- Fragaria vesca Whole Genome v4.0.a1 Assembly & Annotation
- Malus Unigene v5.0
- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
- Malus x domestica GDR RefTrans V1
- Malus x domestica Whole Genome v1.0 Assembly & Annotation
- Malus x domestica Whole Genome v1.0p Assembly & Annotation
- Prunus avium GDR RefTrans V1
- Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
- Prunus persica GDR RefTrans V1
- Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
- Prunus persica Whole Genome v1.0 Assembly & Annotation
- Prunus Unigene v5.0
- Pyrus communis Genome v1.0 Draft Assembly & Annotation
- Pyrus Unigene v5.0
- Rosaceae Family Unigene v5.0
- Rosa chinensis Whole Genome v1.0 Assembly & Annotation
- Rosa Unigene v5.0
- Rubus GDR RefTrans V1
- Rubus GDR RefTrans V2
- Rubus occidentalis Whole Genome Assembly v1.0 & Annotation v1
- Rubus occidentalis Whole Genome Assembly v1.1
- Rubus Unigene v5.0
1. Sequence Name
The names of the sequences to be retrieved can be typed in the text box. Each name should be separated with a new line or comma. Leave blank to retrieve all features matching other criteria.
2. Upstream and downstream bases
A numeric value specifying the number of upstream bases and downstream bases to include in the downloaded sequences can be typed in the text boxes. This only works if the feature is aligned to a larger sequence.
If you have any questions/comments/feedback about the sequence retreival tool, please let us know via the contact form.