CH03c02, CH03c02 (genetic_marker) Malus x domestica

Marker Overview
NameCH03c02
Genbank IDN/A
TypeSSR
SpeciesMalus x domestica
Repeat MotifGA
PCR Conditionannealing temp 60 degree
Primer 1CH03c02.primer 1: TCACTATTTACGGGATCAAGCA
Primer 2CH03c02.primer 2: GTGCAGAGTCTTTGACAAGGC
Product Length116-136
116–136
Max Length139 bp
PolymorphismP_ CH03c02
Publication[view all]
ContactC. Gessler
Andreas Peil
Miyuki Kunihisa
Zhen Han
Publications
YearPublication
2006Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
2010Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010 Oct; 42(10):833-839.
2002Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241.
2014Wöhner TW, Flachowsky H, Richter K, Garcia-Libreros T, Trognitz F, Hanke M, Peil A. QTL mapping of fire blight resistance in Malus ×robusta 5 after inoculation with different strains of Erwinia amylovora. Molecular breeding. 2014; 34(1):217-230.
2014Kunihisa M, Moriya S, Abe K, Okada K, Haji T, Hayashi T, Kim H, Nishitani C, Terakami S, Yamamoto T. Identification of QTLs for fruit quality traits in Japanese apples: QTLs for early ripening are tightly related to preharvest fruit drop. Breeding science. 2014 Sep; 64(3):240-51.
2015Cui MS, Yang LL, Han YY, Zhang Q, Zhao YB, Li CM, Han YP, Wang Y, Chen DM, Yang FQ, Zhang XZ, Han ZH. Genetic mapping reveals sophisticated responses of Malus domestica to Botryosphaeria dothidea isolates. Journal of Phytopathology. 2015; 163:42–53.
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
primer 1CH03c02.primer 1Malus x domesticaprimer
primer 2CH03c02.primer 2Malus x domesticaprimer


This genetic_marker is adjacent to the following QTL feature(s):

Feature NameUnique NameSpeciesType
fruit sizeqFRSZ.JGD-J12.2008Malus x domesticaQTL


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CH03c02CH03c02Malus x domesticamarker_locus
CH03c02CH03c02-116.272Malus x domesticamarker_locus
CH03c02CH03c02-145.967Malus x domesticamarker_locus
CH03c02CH03c02-131.76Malus x domesticamarker_locus
CH03c02CH03c02-37.3Malus x domesticamarker_locus
CH03c02CH03c02-24.7Malus x domesticamarker_locus
CH03c02CH03c02-48Malus x domesticamarker_locus
CH03c02CH03c02-160.61Malus x domesticamarker_locus


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Apple-DT-F112N/A53CH03c02View
2Apple Integrated map12N/A45CH03c02View
3Apple-FD-F1-2006D12N/A63.6CH03c02View
4Apple-IM-F1-IdaredIda LG 12N/A51.8CH03c02View
5Apple-IM-F1-Mr5Mr5 LG 12N/A33CH03c02View
6Pear-PM-F1-Moonglow12N/A37.62CH03c02View
7Apple-OA-F1-AkaneAK12N/A39.8CH03c02View
8Apple-JGD-F1-BotcankerG12N/A12.8CH03c02View
9Apple-GDxJ-F1-2012LG12N/A70.7CH03c02View
10Apple-JGD-F1-2014J12N/A54.9CH03c02View
11Apple-JGD-F1-2014G12N/A65.2CH03c02View
12Apple-RGTxGD-F1-2015GD_12N/A48.22CH03c02View
13Apple-DP-F1-2013D12N/A39.6CH03c02View
14Apple-X5210X8402-F1-ConsensusLG12N/A48.1CH03c02View
15Apple-X5210X8402-F1-X5210LG12N/A56.5CH03c02View
16Pear-Bartlett-F1-2007Ba12N/A42.6CH03c02View
17Pear-La_France-F1-2007La12N/A40.5CH03c02View
18Apple-FD-Discovery-F1-2003D12N/A55.8CH03c02View
19Pear-Rcf-F1-femaleLG12N/A116.27CH03c02View
20Pear-M-F1-maleLG12N/A145.97CH03c02View
21Pear-RM-F1-IntegratedLG12N/A131.76CH03c02View
22Apple-JM7xS63-F1J12N/A37.3CH03c02View
23Apple-JM7xS63-F1S12N/A24.7CH03c02View
24Pear-Ba-F1-2013Ba12N/A48CH03c02View
25Pear-integrated_consensus_map-IPCG-2017LG12N/A160.61CH03c02View
Contact
NameDetails
C. Gessler
First name:Cesare
Last name:Gessler
Institution:ETH Zurich
Address:ZTH Zurich Institut f. Integrative Biologie LFW C 15 Universitatstrasse 2 8092 Zurich
Country:Switzerland
Email:cesare.gessler@agrl.ethz.ch
Phone:+41 44 632 38 71
Fax:+41 (0) 632 11 08
Last update:May 2002
Andreas Peil
First name:Andreas
Last name:Peil
Title:Researcher
Institution:Institute for Breeding Research on Fruit
Address:Kulius Kuhn-Institut (JKI), Pillnitzer Platz 3a, 01326
Country:Dresden, Germany
Email:andreas.peil@jki.bund.de
Miyuki Kunihisa
First name:Miyuki
Last name:Kunihisa
Institution:NARO Institute of Fruit Tree Science
Address:2-1 Fujimoto, Tsukuba, Ibaraki 305-8605
Country:Japan
Email:miyuky@affrc.go.jp
Phone:81-29-838-6437
Keywords:fruit drop
Zhen Han
First name:Zhen
Last name:Han
Institution:Institute for Horticultural Plants, China Agricultural University
Address:Beijing 100193, China
Country:China
Email:rschan@cau.edu.cn
Keywords:apple