Prunus-TE-6K cherry SNP-estimate | GDR

Map Overview


Name	Prunus-TE-6K cherry SNP-estimate
Species	Prunus persica Prunus dulcis
Map type	genetic
Population type	F2
Map unit	cM
Maternal parent	Texas
Paternal parent	Earlygold
Population size	111
Number of loci	5696
Number of QTL	7
Number of linkage groups	8
Publication	[view all]
Contact	Cameron Peace

Stock

Name

Type

Details

Texas_x_Earlygold-F2

population

Description:	F2 population obtained by selfing the F1 hybrid plant ‘MB 1.37’ (almond ‘Texas’ 3 peach ‘Earlygold’)
Population size:	111
Alias:	TxE

Contact

Name

Details

Cameron Peace

First name:	Cameron
Last name:	Peace
Title:	Professor
Institution:	Washington State University
Address:	Department of Horticulture, Washington State University, Pullman, Washington, United States of America
Country:	USA
Email:	cpeace@wsu.edu

Publication


Year	Publications
2012	Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.
2017	Mgbechi-Ezeri J, Porter L, Johnson KB, Oraguzie N. Assessment of sweet cherry (Prunus avium L.) genotypes for response to bacterial canker disease. Euphytica. 2017; 213:145.

Map Loci

This map contains 5,696 marker loci:

Download Table


Linkage Group	Marker Name	Locus Name	Type	Position
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_09929172	RosBREED_snp_sweet_cherry_Pp1_09929172	marker_locus	13.83 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10033789	RosBREED_snp_sweet_cherry_Pp1_10033789	marker_locus	13.88 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10046139	RosBREED_snp_sweet_cherry_Pp1_10046139	marker_locus	13.89 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10068854	RosBREED_snp_sweet_cherry_Pp1_10068854	marker_locus	13.9 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_tart_cherry_f_Pp1_10061954	RosBREED_snp_tart_cherry_f_Pp1_10061954	marker_locus	13.9 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10077418	RosBREED_snp_sweet_cherry_Pp1_10077418	marker_locus	13.91 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10128117	RosBREED_snp_sweet_cherry_Pp1_10128117	marker_locus	13.93 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10111083	RosBREED_snp_sweet_cherry_Pp1_10111083	marker_locus	13.93 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10138561	RosBREED_snp_sweet_cherry_Pp1_10138561	marker_locus	13.94 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10143073	RosBREED_snp_sweet_cherry_Pp1_10143073	marker_locus	13.94 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_tart_cherry_a_Pp1_10178231	RosBREED_snp_tart_cherry_a_Pp1_10178231	marker_locus	13.96 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10176147	RosBREED_snp_sweet_cherry_Pp1_10176147	marker_locus	13.96 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10175178	RosBREED_snp_sweet_cherry_Pp1_10175178	marker_locus	13.96 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10194300	RosBREED_snp_sweet_cherry_Pp1_10194300	marker_locus	13.97 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10187485	RosBREED_snp_sweet_cherry_Pp1_10187485	marker_locus	13.97 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_tart_cherry_a_Pp1_10196636	RosBREED_snp_tart_cherry_a_Pp1_10196636	marker_locus	13.97 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10212317	RosBREED_snp_sweet_cherry_Pp1_10212317	marker_locus	13.98 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10220094	RosBREED_snp_sweet_cherry_Pp1_10220094	marker_locus	13.98 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10205646	RosBREED_snp_sweet_cherry_Pp1_10205646	marker_locus	13.98 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10237387	RosBREED_snp_sweet_cherry_Pp1_10237387	marker_locus	13.99 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_tart_cherry_f_Pp1_10235212	RosBREED_snp_tart_cherry_f_Pp1_10235212	marker_locus	13.99 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10229579	RosBREED_snp_sweet_cherry_Pp1_10229579	marker_locus	13.99 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10275599	RosBREED_snp_sweet_cherry_Pp1_10275599	marker_locus	14.01 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_sweet_cherry_Pp1_10267971	RosBREED_snp_sweet_cherry_Pp1_10267971	marker_locus	14.01 cM
Prunus-TE-6K cherry SNP-estimate.1	RosBREED_snp_tart_cherry_a_Pp1_10265101	RosBREED_snp_tart_cherry_a_Pp1_10265101	marker_locus	14.01 cM

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Map QTL

This map contains 7 QTL:

Download Table


Linkage Group	Name	Type	Start	Stop	Peak
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.1	QTL	20 cM	35 cM	28 cM
Prunus-TE-6K cherry SNP-estimate.2	qRPSS.TE-LG2.2	QTL	40 cM	46 cM	43 cM
Prunus-TE-6K cherry SNP-estimate.3	qRPSS.TE-LG3.1	QTL	35 cM	46 cM	44 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.1	QTL	2 cM	13 cM	9 cM
Prunus-TE-6K cherry SNP-estimate.5	qRPSS.TE-LG5.2	QTL	24 cM	40 cM	27 cM
Prunus-TE-6K cherry SNP-estimate.7	qRPSS.TE-LG7.1	QTL	3 cM	7 cM	5 cM
Prunus-TE-6K cherry SNP-estimate.8	qRPSS.TE-LG8.1	QTL	34 cM	55 cM	39 cM

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